barSeed - Barley Seed Development Database

Probe CUST_7158_PI390587928

Source Contig U35_22422

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7158_PI390587928	Hv_44K_v2	CGATCTGATTCATCCAGCTTCTTCTTCCTCCTCTCCCTCTCTCCGAATTGACTGATAGAG	223	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360734	2075	2e-24	217 - 276	100	60 / 60	plus	None
MLOC	MLOC_56605.1	2134	2e-24	353 - 412	100	60 / 60	plus	None
JLOC1	JLOC1_36628.1	2395	8e-25	341 - 400	100	60 / 60	plus
Harvest21	ABC29467	278	3e-25	152 - 211	100	60 / 60	plus
Harvest35	U35_22422	523	3e-25	224 - 283	100	60 / 60	plus

Contig Sequence (523 bp)

>U35_22422 523 Hv_44K_v2
CCACGCGTCCGGTGAAGAGGGGAGAGAAGAAGAAGTGGTCACTGCAGACAGAAGAGAAGA
TCAAAAGAGATCGGGCGATGCAGCACGAGATTGGAGGGCAACAACAAGCGCAGCAGCAGC
AGCAGCAGCAGCAGCCGGCAGAAGGGGCAGACGAGCGAAGCAGCCAGCAGCGCCAACGGC
TTCTTCCACTCTTCTCCCTCGAGCTCCAGCTGCAGCTCTAGCTCGATCTGATTCATCCAG
CTTCTTCTTCCTCCTCTCCCTCTCTCCGAATTGACTGATAGAGGGAGGAGGAGGAGGAGG
AGGATTAGCGAGAAGCTGGTGCGGCGCGGCGCGGCGGGCGGCCATGGACGACACCTTCAA
GTCGCTCTCCATGGACTACCTCAACCTGCTCATCAACGGCCAGGCCTTCAGCGACGTGAC
GTTCAGCGTGGAGGGCCGGCTGGTGCACGCGCACCGCTGCATCCTCGCCGCGCGCAGCCT
CTTCTTCCGCAAGTTCTTCTGCGGCGCCGCGGCGGACCAGGCC

Homology of Contig U35_22422 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None