barSeed - Barley Seed Development Database

Probe CUST_7154_PI390587928

Source Contig U35_22426

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7154_PI390587928	Hv_44K_v2	GGTCCTCGGTTAAGACCAAGCAGAACTCATCTGCAAGAAAGCAATTATAAATTTGATGCT	1210	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.831	1.848	1.132	0.870	0.339	0.411
Raw	440.174	715.012	374.838	460.263	61.797	82.481

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_24013.2	2090	2e-24	1439 - 1498	100	60 / 60	minus	ABC17969
JLOC1	JLOC1_16549.3	852	8e-25	713 - 772	100	60 / 60	plus
Harvest21	ABC17969	1270	3e-25	1 - 60	100	60 / 60	minus	ABC17969
Harvest35	U35_22426	1270	3e-25	1211 - 1270	100	60 / 60	plus

Contig Sequence (1270 bp)

>U35_22426 1270 Hv_44K_v2
GGGCAGATATGGACAGTGAACCTTCTGCAACCAATATTCGTTCACTGTCAGCAAGCTCTT
GATTATTCATGGTCAAGTCTTCTACGTGAGGGCCGAGCTAAGGTTCCTGATAACTTCGGT
AATCTTTCTGGGTCAGAACTTAAGGTTGAGGTGATGGAAGAGAAGCTGTTACGGGACTTG
ACTCGTGAAATTTGTTCTGTGCTTTGGGTGTTAGCATTACCTGGTTTGAATAGTGGACTT
CCATCTTTGGAACAACTTGGACCTGTCAACCGGATTGATTTTTCTCTTAAAAGTCTGGAG
TCATTTGCTTCCAGCTCTCTTACTGGATTTCTTATGCTTAATGCTGGCACTGCCCTGCCT
GCTTTGAGAATAACTGTTGAAGTGTTCAGTTGGCCAGATAGTGAAGCAGTGACTAAAGTA
ATACCCTTTTGTGGTGCATTGATTCACCTTGCTGTTGCAACAAACCGGGCTGAGCTGAGG
CAGTTTGTTGGAAAGGATCTATTTTCTTCTATAATACAGGGCTTATCTGTTGAATTGAAT
GCCGTTGTGAGTGCAGAGCTTATTGGACTTTGTCGAGAAATATATCTTTATCTATCAGAC
AAAGATCCTGCACCTAAACAGGTTCTTCTATCCCTCTCAGACATGAAGCAGGAAGATTTG
CTGGCTTTTGATGATTCTTTGAGCAAAACTGCTAGTCCAAAAGAGCAGAAGCAACATATG
CGAAGCTTACTTCTGCTAGCTACAGGGAACAAACTAAAAGCTCTTGCTTCTCAAAAGACC
ACTAATATTATCACCAATGTTACAACTCGAAATCGGGGCACTGTAGCACACCATGGATCC
AATGCTGAAGATGATGATCACATCGGATTAGCTGGACTATCATAGGAATGACCTGCTGAA
GTTGCAGTTGTGTACAAAATGGTGAAAAGATGGTTCTAAACTTGGTACTGTGGTAAAGAA
TTGTCAAAAACCAGATTCTTGCAGCATTCTTTTTTTGAATATGCAAGTGCGTACCATATA
TTGAAGGAGAGACGGTGAAGAACCCATCCACATCAAAATGTTACATATGTCAATTAGGGC
TGGGCATTCGGTTCCCCTGAACCGATCAGTTCGGTGCTTTGGGTAATTTAGAAATTCGAT
TTATTGAAATTGTAGACTGGTTTCCTCCAAAAGCAACAACCAAGACTTGGGTCCATCGGA
AGTTTGGTTCGGTCCTCGGTTAAGACCAAGCAGAACTCATCTGCAAGAAAGCAATTATAA
ATTTGATGCT

Homology of Contig U35_22426 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g26160.1	1199	5e-130	protein\|exportin 1, putative, expressed
Brachypodium v1_2	Bradi2g12810.1	1193	4e-142
Arabidopsis v10	AT3G05040.1	1202	3e-78	\| Symbols: HST, HST1 \| ARM repeat superfamily protein \| chr3:1401479-1408095 REVERSE LENGTH=1202