barSeed - Barley Seed Development Database

Probe CUST_714_PI390587928

Source Contig U35_21779

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_714_PI390587928	Hv_44K_v2	CTCTATACCAAGGCGACAAAGGCAACAAGAAGGTTAGGAAAATTCCTTCAATAGCTGCTA	1266	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356737	2391	2e-24	1292 - 1351	100	60 / 60	plus	ABC16607
MLOC	MLOC_38535.5	4207	2e-24	1312 - 1371	100	60 / 60	plus	ABC02943 ABC02946 ABC16607
MLOC	MLOC_38535.2	4328	2e-24	1357 - 1416	100	60 / 60	plus	ABC02943 ABC02946 ABC16607
MLOC	MLOC_38535.1	2482	2e-24	1368 - 1427	100	60 / 60	plus	ABC16607
MLOC	MLOC_38535.6	4334	2e-24	1298 - 1357	100	60 / 60	plus	ABC02943 ABC02946 ABC16607
MLOC	MLOC_38535.3	4172	2e-24	1357 - 1416	100	60 / 60	plus	ABC02943 ABC02946 ABC16607
MLOC	MLOC_38535.4	2590	2e-24	1324 - 1383	100	60 / 60	plus	ABC16607
JLOC1	JLOC1_25063.2	4241	8e-25	1297 - 1356	100	60 / 60	plus
JLOC1	JLOC1_25063.1	4194	8e-25	1297 - 1356	100	60 / 60	plus
Harvest21	ABC16155	1326	3e-25	1267 - 1326	100	60 / 60	plus
Harvest35	U35_21779	1326	3e-25	1267 - 1326	100	60 / 60	plus

Contig Sequence (1326 bp)

>U35_21779 1326 Hv_44K_v2
CATACCTTCTTCCCCAAATCCCCGGAACCCTAGTGAAGAGAAGGCTCGAGTTCGACATGG
CGACGACGAGCGAGTCCACAGCCAACTCCACCGTAACGAGCGCGACAGCCGACGGAGATA
CAGAGCGTGAGCAAGAGCACGGCAATGGTGCGACTGCCGCCCCTGCAGTGGTGCAGCAGG
AGGAGGAGGGGGAAGAACTGATCGGTCCTGGCCCCGCGCCGGCGCGGCAGCGGCAGAAGC
GCCCTCTCCAGTTCGAGCAGGCTTTCCTCGACGCCCTCCCCTCCGCAGCCATGTACGAGA
AGAGTTATATGCATAGGGACGTCGTCACGCACGTCGCCGTTTCTCCCGCTGACTTCTTCA
TTACCGGGAGCGCCGATGGACATCTGAAATTCTGGAAGAAGAAACCCAGTGGAATCGAAT
TTGCTAAACATTTTCGGTCTCATCTCAGTCCCATCGAAGGCTTAGCTGTTAGCGTTGATG
GCTTACTTTGCTGCACGATCTCTAACGACCAGTCTGTCAAGATATATGATGTTGTAAACT
ATGACATGATGTTCATGATGCGGCTCCCATTTGTCCCTGGGGCGATTGAGTGGGTTTATC
GGCAGGGTGATGTTAAACCTAAACTTGCTGTTAGTGACCGCAATACATCTTCTGTTCACA
TATATGACACTCATTCTGGTTCAAACGATCCCATCATCTCCAAAGAGATTCATGCTGGCC
CTGTAAAAGTTATGAAATATAACCATGCCCAGGATGTTGTGATATCTGCTGATGCCAAGG
GACTCTTGGAGTATTGGTCTCCATCTACCCTTAAGTTTCCAGAGGATGCGGTGAATTTTC
GTTTAAAAACAGATACAAATCTATTTGAACTTGCAAAATGCAAGACTAGTGTGTCTGCTA
TTGAGGTGAGCAACGATGGCACTCAATTTGTGGTCACATCCCCTGACCGCAGGATAAGGG
TATTTTGGTTCAAAACTGGTAAATTAAGACGCGTGTATGACGAGTCCCTTGAGGTGGCAC
AAGATCTTCAGAAAAGTGACGTTCCATTGTATCATCTTGATGCTATTGATTTTGGGAGAA
GGATGGCTGTCGAGAAGGAAATAGAAAAGACAGAAAATGTTCCTCAACCAAATGCTGTAT
TCGATGAGAGCTGCAACTTCCTTATTTATGCCACCCTTTTGGGCATAAAGGTTGTAAATT
TGCACACAAATAAGGTTCCCCGTATCCTGGGGAAGGTAGAGAACAATGAGAGGTTTCTGA
GAATTGCTCTATACCAAGGCGACAAAGGCAACAAGAAGGTTAGGAAAATTCCTTCAATAG
CTGCTA

Homology of Contig U35_21779 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os08g44330.1	652	protein\|peptidylprolyl isomerase domain and WD repeat-containing protein 1, putative, expressed
Brachypodium v1_2	Bradi3g42750.3	653
Arabidopsis v10	AT3G44600.1	631	\| Symbols: CYP71 \| cyclophilin71 \| chr3:16165368-16169201 REVERSE LENGTH=631