barSeed - Barley Seed Development Database

Probe CUST_7145_PI390587928

Source Contig U35_10450

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7145_PI390587928	Hv_44K_v2	AGCAAATACGCAACCATGTACTACGACAAATGCTTCCTCCACTACTCGAACATCCACGTC	312	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365499	2360	2e-24	329 - 388	100	60 / 60	plus	ABC17366 ABC21124
MLOC	MLOC_38454.3	966	2e-24	600 - 659	100	60 / 60	minus	ABC21124
MLOC	MLOC_38454.2	1215	2e-24	641 - 700	100	60 / 60	minus	ABC21124
MLOC	MLOC_38454.1	1534	2e-24	960 - 1019	100	60 / 60	minus	ABC21124
JLOC1	JLOC1_25002.2	1087	8e-25	250 - 309	100	60 / 60	plus
JLOC1	JLOC1_25002.1	1338	8e-25	361 - 420	100	60 / 60	plus
Harvest21	ABC21124	583	3e-25	313 - 372	100	60 / 60	plus	ABC21124
Harvest35	U35_10450	584	3e-25	313 - 372	100	60 / 60	plus

Contig Sequence (584 bp)

>U35_10450 584 Hv_44K_v2
GTCATGGCTCGGCATGCCGTCCTGTTCGTGTCCATCGTCGCCACACTTGTAGCGCCCCGA
GCCGCCGGATACCCCTGGCCGACCTGCGGCACGACCGGCAGCTTCCCGGCCAACGACAGC
ACGTACCTGGCGAGCATCAACACCATCGCCGCCACCCTCCCCAGGAACGCCTCGGCGTCC
CCGGGCCTGTACGCCACCGGGCAGGCAGGCCAGGTCTGGGCCCTCGCGCTCTGCCGGGGC
GACCTCAACGCCACCTCCTGCTTCGACTGCCTCACCAAGGGATTCCATGACCTGCCGAGC
GTGTGCGTCTACAGCAAATACGCAACCATGTACTACGACAAATGCTTCCTCCACTACTCG
AACATCCACGTCCGCACCTCTGACCTCACCGCGAGGAGGTCGGAGCTCTCCATCACCTCT
GTCGACAACGTTACGGCGGTGCCGGCCCGGTTCGACCGCGTTGTGACGGTGCTCCTGAAC
GCCACCGCGGACTATGCCGCGTACAACTCCTCCGTGACACGGCTGTACGCATCCGGGATG
GCCTCTTTCGACCAGGAGATCCCTGACGTGTACAGCTGGGCGCA

Homology of Contig U35_10450 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g35310.2	519	4e-54	protein\|TKL_IRAK_DUF26-lc.12 - DUF26 kinases have homology to DUF26 containing loci, expressed
Brachypodium v1_2	Bradi1g25552.1	671	7e-65
Arabidopsis v10	None