barSeed - Barley Seed Development Database

Probe CUST_7144_PI390587928

Source Contig U35_10451

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7144_PI390587928	Hv_44K_v2	TCCTTGCCATGTGTTCCTTTTGTGATGTGTTCGACTTGAACTGCTAAATTTATTAATATG	590	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11764.1	3184	7e-23	3028 - 3087	98	59 / 60	plus	ABC08248 ABC18711
JLOC1	JLOC1_7831.1	3069	4e-23	2927 - 2986	98	59 / 60	plus
Harvest21	ABC18711	677	3e-25	591 - 650	100	60 / 60	plus	ABC18711
Harvest35	U35_10451	677	3e-25	591 - 650	100	60 / 60	plus

Contig Sequence (677 bp)

>U35_10451 677 Hv_44K_v2
CATGCTTTGGAGACATTGCTCTTGCCATTGGCGGGAATTTTGAGAAATACCTGCCATATG
CCATACCAATGCTTCAAGGAGCTGCTGAGCTTGTTGCTGTTTTGGATCAAAGTGATGATG
ATATGGTTCACTATGGTAATCAGCTCAGAAGGGGAATATTTGAGGCTTACTCTGGCATAT
TACAGGGTATAAAAGGCCCAAAAGCTCAGCTGATGGTACCTTGTGCAACCCACCTATTGC
AGTTCACGGAAGCTGTCTACAAGGATGGGAGCAGGGATGAGAGTGTGACAAAGGCTGCAG
TGGCAGTCCTTGGTGATCTTGCGGATACACTTGGCCCGGTATCAAAAGATTTGTTCAGGA
GCCACCTCTTCCATGTCGAGTTCTTCAGGGAGTGCCTTGATTCAGACGAAGAAGTCAGGG
AGACTGCATCGTGGGCGCAGGGAATGATAAACCAAGCAGTGGTCGCGTGACATGAGAAAT
CATTTTCTACCGTTGGTTGTGGTGGAGGTTTCTTCTTGTGGATCTGTAAAGTCCATTTGC
CACAGATGAATGGAAGAACTCCAATATGTTGTAGTGTTAGCAGTAGGGGATCCTTGCCAT
GTGTTCCTTTTGTGATGTGTTCGACTTGAACTGCTAAATTTATTAATATGTTCTGACTGC
TTAAAAAAAAAAAAAAA

Homology of Contig U35_10451 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g28510.2	869	3e-82	protein\|importin subunit beta, putative, expressed
Brachypodium v1_2	Bradi4g00730.1	869	4e-85
Arabidopsis v10	AT3G08943.1	871	8e-52	ARM repeat superfamily protein \| chr3:2719198-2721911 REVERSE LENGTH=871