barSeed - Barley Seed Development Database

Probe CUST_7141_PI390587928

Source Contig U35_10454

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7141_PI390587928	Hv_44K_v2	GGGAATTGTGCTGTATAAAATTTTACCCATAAAGTAAGCGAAAACCCAGGGTTTTAATGT	498	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64975.3	6584	7e-23	5614 - 5673	98	59 / 60	plus	ABC16046 ABC20499 ABC39626
MLOC	MLOC_64975.1	2708	7e-23	1488 - 1547	98	59 / 60	plus	ABC16046 ABC20499 ABC39626
MLOC	MLOC_64975.2	2780	7e-23	1437 - 1496	98	59 / 60	plus	ABC16046 ABC20499 ABC39626
JLOC1	JLOC1_42713.1	2104	4e-23	1023 - 1082	98	59 / 60	minus
JLOC1	JLOC1_42712.1	2672	4e-23	1492 - 1551	98	59 / 60	plus
Harvest21	ABC20499	575	3e-25	18 - 77	100	60 / 60	minus	ABC20499
Harvest35	U35_10454	575	3e-25	499 - 558	100	60 / 60	plus

Contig Sequence (575 bp)

>U35_10454 575 Hv_44K_v2
GAAGCCCATGGGCACCAAGGTTTTAAGAAACAAAGCTCCCCGCTGGCACGAGCACTTGCA
GTGCTGGTGCCTAAACTTCCATGGGCGGGTAACGGTCGCATCCGTCAAGAACTTCCAGCT
GGCTGCTGCCACGGACCCCAATGACCCTAGTAGCTCCAGGGATGAGGGGACGGTGCTGCT
GCAATTTGGTAAGGTCGACGACGATATCTTCACGATGGATTATCGGCAGCCACTGTCAGC
ATTTCAAGCCTTCGCCATCAGCCTCAGCAGCTTTGGTACCAAGCTAGCTTGTGAATAGCA
ATATGGTGGCTCGAAGTATCACCGTTTGGCTGTCACAGTCGCTGTCGCAGTTGCAGTGGA
TGCATCCGCAAGTCTTGTTGCGTCTCAGTAATTCGGCGTTTTCTTGTTCTTTTTGTTTGG
CGCCGATGGCTATATGTATGTATCATGGGCATGTACAAGAAAAATGTAAGGTTTGTTGAA
TGTATTTAGTTCCAATGAGGGAATTGTGCTGTATAAAATTTTACCCATAAAGTAAGCGAA
AACCCAGGGTTTTAATGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_10454 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g48370.1	357	9e-58	protein\|OsFBT1 - F-box and tubby domain containing protein, expressed
Brachypodium v1_2	Bradi2g46350.1	361	2e-60
Arabidopsis v10	None