barSeed - Barley Seed Development Database

Probe CUST_7133_PI390587928

Source Contig U35_22432

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7133_PI390587928	Hv_44K_v2	AGTTCTTGTCATACTTCAGACCATGCATCATCCCTGTACAAGGTAGCTTCTCTTCGCACT	485	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250764.1	2921	2e-24	391 - 450	100	60 / 60	plus	ABC21053
Harvest21	ABC34704	616	3e-25	486 - 545	100	60 / 60	plus
Harvest35	U35_22432	616	3e-25	486 - 545	100	60 / 60	plus

Contig Sequence (616 bp)

>U35_22432 616 Hv_44K_v2
GAATTGTTTAACCTCTGGCAGCTCCCCAAACTTCACTAGCAGCTGCTTGCCCACCTTTCC
TTTTCTTCTTGTTCTTCATCTTCTTCCTCCTCCCCTGCTCTGGTCACTTATTTGGTGGGA
GCGAGCTCGCATTGCCTCCTCTTGCTGCAGTCCTTCGAGGGCCATGTCTACAATGAAGGG
CGTCGACGACGAGTTCCTCGGCGTCGGCGACAAGCCAGGGCTGGACATCTGGTGTATTAT
GGGCACCAATGTAGTTCCAATTGCAAAATCCTTGCATGGCAAGTTCTACACTGGGAACTG
CTATATCATACTCCATACAGCTGAAGTCAAGAGCGGAACTCGAGGGCATAATGTGCATTA
CTGGATAGGGGATGAGGCCAAAGAGGAAGATTGTTTGATGGCCTCTGACAAGGCCGTCGA
GTTGGATGCGGCGCTGGGCTCTCACGCGATCCAGTACAGGGAAACACAAGGCGAAGAATC
CGACAAGTTCTTGTCATACTTCAGACCATGCATCATCCCTGTACAAGGTAGCTTCTCTTC
GCACTGGAGAAGATCTAGGGATGAATGTGACGGGACCACGATGTTTCGGTGCGAAGGAGA
GCATGTAGCTCGTCTA

Homology of Contig U35_22432 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g06110.1	850	2e-77	protein\|villin, putative, expressed
Brachypodium v1_2	Bradi2g35467.1	833	3e-90
Arabidopsis v10	None