barSeed - Barley Seed Development Database

Probe CUST_7131_PI390587928

Source Contig U35_22434

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7131_PI390587928	Hv_44K_v2	ACACTTGATTGTGAATATAGCATGATGCGAGCACATACTGGACAAGTGTGACGAAGCTGT	1124	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.374	1.499	1.074	1.059	0.344	0.386
Raw	230.015	405.477	249.031	400.902	44.064	53.825

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249530.1	1965	2e-24	1577 - 1636	100	60 / 60	plus	None
MLOC	MLOC_20200.1	1279	2e-24	1029 - 1088	100	60 / 60	plus	None
JLOC1	JLOC1_14011.2	1434	8e-25	1017 - 1076	100	60 / 60	plus
JLOC1	JLOC1_14011.1	1276	8e-25	859 - 918	100	60 / 60	plus
Harvest21	ABC17897	1381	3e-25	1125 - 1184	100	60 / 60	plus
Harvest35	U35_22434	1382	3e-25	1125 - 1184	100	60 / 60	plus

Contig Sequence (1382 bp)

>U35_22434 1382 Hv_44K_v2
CTGAGGGAGAGGGCTAGGGTCATTGGAACATGGGATGACCATGATTACGGATTGAATGAT
GCAGGAAAGGAATATAGTGGAAAAGAGTTCTCCCAAAGGCTTCTATTAGATTTCTTGGAT
GAAGCTGAAGACAGTTCACGGAGGAAACAAGCAGGTGTTTATGCCTCATACATGTTTGGT
CCCGAAGGAAAACGTGTAAAGGTAATAATGTTGGACACCAGATATCACAGAGACCCACTC
TTAAGTGATGGAACTATACTTGGAGATCCTCAGTGGCAGTGGCTGGAGAGGGAGCTACAT
GGTCCCCCCTCAGAGATGACCATCATTGGATCTTCAATTCAGGTGGTATCCAATCTTTCT
GCCACCACTGGACCTTTGTTCTATGTGGAGTCGTGGGCACGCTTTCCGAGGGAAAGAGAA
CGGCTGTTTAGACTGATCGATAGCAGTAAGAGAAATGGGGTCTTATTTATTAGTGGTGAT
GTTCATTTTGGAGAAATTGCTCGTTTTGACTGTGGTGCTCAATATCCATTGTATGATATT
ACCTCAAGTGGTCTTACCCAGTCTGTCGAGAATTCTGTACCAGCAGTACTTCAATCTGTC
ATGAGACTTCTGGCTTGGCTGACACCAACCCCCATGCGAGTCTTCAGCCCTAACTGTCGT
CACAAATCATGCTCATATGGTCAGCCAAATTTTGGAGCAATCGAGATAGATTGGAATGCA
GTTCCTTCATGGGTTAAAATTGAACTAAGAGATTTACAGGGCAATTCGGTTGATGGTGTG
GAGTTCCCTATATTTGAGCTGAAGCCATCAAATGCGCATGCAAACAAAAAAGAAGGGCAT
TCTTTTGAAGCACATTGTAGTCTTGAAACAGAGCTTTCATGGCTGGTACGGTACCGCCTT
GCGCTGCTGTTCTTTGGCACCATTGCCGTTTTTGTCGTTGTGTTGGTGCTTCTCGTAATC
GCCTGCTGTTCAGCTACTAAAATGTTCACTAGGAAGTGCAAGATGGCATAGCTACACATG
ACAGAGGACAAGGGAAGGGAGTTTTCGATCAGACTAGTGTTGTGAAAACTGAATTGGACA
CTGACCAGGTGAGCAGGGATGTTGATTGGCCAAGGATCAACATGACACTTGATTGTGAAT
ATAGCATGATGCGAGCACATACTGGACAAGTGTGACGAAGCTGTGATGAGTCTCCGTATA
GCATGGTGGAGAAATGATGTCATGGAAATCCCTTTGGTTAACAATGAATGAATGGGTACA
ATACGGGTTTATCTGTTTGTTTTATATATATATGCATTTTTGTTAGGACCCTAGTAACCA
ACGAGCGTCAGCTGGGAAGGACGACAATTGCGGAAGATTTGCATGGCAATTTATGTTGGT
CT

Homology of Contig U35_22434 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g37910.1	455	0.0	protein\|expressed protein
Brachypodium v1_2	Bradi3g47460.1	453	0.0
Arabidopsis v10	AT5G42370.2	453	2e-117	Calcineurin-like metallo-phosphoesterase superfamily protein \| chr5:16939329-16941463 REVERSE LENGTH=453