- Probe CUST_712_PI390587928
- Source Contig U35_33754
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_712_PI390587928 | Hv_44K_v2 | GTAGGCGATTTTGTACGTAAGTAGTTTGCATTCTTGGTTTTCTTCAATAGTCTTTGATGT | 45 | GeneList: darkslateblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.491 | 2.632 | 1.092 | 0.771 | 0.216 | 0.330 |
| Raw | 100.942 | 277.274 | 97.796 | 108.553 | 9.713 | 17.858 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_3087.4 | 2154 | 3e-21 | 18 - 77 | 97 | 58 / 60 | minus | None |
| MLOC | MLOC_3087.3 | 2189 | 3e-21 | 80 - 139 | 97 | 58 / 60 | minus | None |
| MLOC | MLOC_3087.2 | 2862 | 3e-21 | 565 - 624 | 97 | 58 / 60 | minus | None |
| JLOC1 | JLOC1_1854.3 | 4249 | 2e-21 | 2159 - 2218 | 97 | 58 / 60 | plus | |
| JLOC1 | JLOC1_1854.2 | 3737 | 2e-21 | 1647 - 1706 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_33754 | 362 | 3e-25 | 46 - 105 | 100 | 60 / 60 | minus |
Contig Sequence (362 bp)
>U35_33754 362 Hv_44K_v2 TGTAAAATATTGCTATCTTTATTTCACCCTTTTGTTTCACAAAATACATCAAAGACTATT GAAGAAAACCAAGAATGCAAACTACTTACGTACAAAATCGCCTACAATTATAAACAGGTT TGGATGTGTGAGTGCTCACGAGGTTTCCTTTATCCTTCTGGTGTCTATAGTTGTTTCTGC TATTGATTTGCGTGAAACATCTGCCAAAGATATAGGTGTTAGTGGGGGCGAGGAAACTTC GCTGCTCTCTCTGCTATGCCTAGACTCCAACAACTTATTCACAGTAATAATAGGTGTTCT TTGGCTATTTGAAGGTATAGAGTAGCTGCGAGTCATGGCAGCAGGTGGTCGTGGAAGCGG TG
Homology of Contig U35_33754 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |