barSeed - Barley Seed Development Database

Probe CUST_7128_PI390587928

Source Contig U35_22437

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7128_PI390587928	Hv_44K_v2	ACAAATGAATCTCAGCAAATAAATCCTGATAACCAAGAGGGATCTATGATGATGTTGCAA	655	GeneList: cyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.759	1.066	1.278	0.720	0.636	0.604
Raw	47.156	41.008	46.952	36.391	12.682	13.404

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14605.1	3475	2e-24	1826 - 1885	100	60 / 60	minus	None
JLOC1	JLOC1_9972.2	3422	8e-25	1362 - 1421	100	60 / 60	plus
JLOC1	JLOC1_9972.1	3164	8e-25	1120 - 1179	100	60 / 60	plus
Harvest21	ABC17147	715	3e-25	656 - 715	100	60 / 60	plus
Harvest35	U35_22437	715	3e-25	656 - 715	100	60 / 60	plus

Contig Sequence (715 bp)

>U35_22437 715 Hv_44K_v2
CCTGCATACTGTAAGCTCTGATAATTTATTCACTTCCTCTGGCGGTCTCCAGAAGAGGGA
AGAGTCTCCAAAAGGGATGGAAAAAAATTCCAACTCAAGTGCAATATGCATCGTAGATGC
AGAAAGGGTCAGTAGTTCCCAAGTTCCTCTTCAGATTCAATTGACCTCGGCCATGGCTGT
GGAGATTTCAGGTGATAAAGCTTCTGGATTGGAGAACACTGATATGTTCTACCCCATGTC
AACGTCCATGGCAAAAGCTAATTCAGATACAGATCTTTGCATTGGAATTCTTTCTCATGA
CAATATTGTTGAATGCCAGGATTATGCTAAGCGACACACTCTTTACTGTGAGAAGCATCT
TCCAAAGTTCCTTAAGCGTGCCAGGAACGGAAAGAGTCGACTCATATCTAAAGATGTTTT
TACTAATTTATTGAAGGGCTGTGCATCAAGGCAAGAAAAAATATGTTTACACCGGGCATG
TGAGTTTCTTTATTGGTTCTTGAGAAACAACTTTTCTCGTCAACAATCTGGTCTTGGTAA
TGACTATATGCCTCAGTTACTAGCGGAAGTGTCGAAGGATACTGATGTTGGAGAATTTCT
GTTAAAGTTGATCTCTAGTGAAAGAGAAAAACTAACAAATCTTTGGGGCTTTGGTACAAA
TGAATCTCAGCAAATAAATCCTGATAACCAAGAGGGATCTATGATGATGTTGCAA

Homology of Contig U35_22437 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g52950.2	1044	2e-123
Arabidopsis v10	None