barSeed - Barley Seed Development Database

Probe CUST_7124_PI390587928

Source Contig U35_34415

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7124_PI390587928	Hv_44K_v2	ATCAGTTGTCCAGTTCTCATGTTGGTGTACTTCACTTGTGCGATTTCTAGCTACCTGCAG	661	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.377	1.283	1.146	0.908	0.401	0.336
Raw	7027.007	10239.847	8041.060	9926.783	1565.617	1425.877

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_34040.4	1262	3e-24	992 - 1050	100	59 / 59	plus
JLOC1	JLOC1_34040.3	1129	3e-24	859 - 917	100	59 / 59	plus
JLOC1	JLOC1_34040.2	1579	3e-24	1309 - 1367	100	59 / 59	plus
JLOC1	JLOC1_34040.1	1410	3e-24	1140 - 1198	100	59 / 59	plus
Harvest21	ABC04803	1374	1e-24	1275 - 1333	100	59 / 59	plus	ABC04803
Harvest35	U35_34415	802	3e-25	662 - 721	100	60 / 60	plus
Harvest35	U35_1398	1421	1e-24	1275 - 1333	100	59 / 59	plus

Contig Sequence (802 bp)

>U35_34415 802 Hv_44K_v2
TAGGGCGAATTGGGCCTTCCAGATGATGCTCGAGCGGCCGCTCGCACCCGGTGCAACGCA
CGGGCACTTTTACTAGTTAGACTAAATAACACAGCAGATACAAGTATAACATCATAGTGC
TGGCTCTAATCTGTCCTACACACTATATCATTCCAAATGGAACTTGCAAGATAATGTAAT
TTGAGAGGAGGTTCATATGGAGGACATGCAACTTGCTTGGACACAAAATTCAGAAGCAAC
CCCATTAACAATCTGTTGTTTTGCTTCTCTTGAGATTCCCTGGTGATAGCCATATCTGAT
GTCACCACTCTGGCCTAGATCACTCAGCGGCCGCTCAGAAGCAGATGGGTCTGCCAACAA
GTGATGAAATGCAGAAGCAAGACATGCTCAAGAAGTTCATGTCTCAGCACCCAGAGATGG
ACTTCTCAAATGTGAAGATGGCTTAAGGTGTGCTGGATCCAAGGAAATGCAGAAAGTTTT
TTATGGAGGAATCACATCTATCCTAGTTATTTTCAGTTTGAGTGTCTTGTGGTTTAGTGT
CTGGTTATTGCTACGAATTTTAGTGTCTGATTGAGGTTTCCATTGCAGCACCCAGAGATG
GACTTCTCAAGGACACAATGTCTTGTGGCTTAGTGAACTCTGTTTTCTGTGGTTGGAACC
AATCAGTTGTCCAGTTCTCATGTTGGTGTACTTCACTTGTGCGATTTCTAGCTACCTGCA
GCGGCCGCCACTCCCGGGAGATGATCTGGCCTGCTTTTGAATTTGCATTAACGGTAGAGA
TTCTCGTCGTCCTTGGGCAGCC

Homology of Contig U35_34415 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None