barSeed - Barley Seed Development Database

Probe CUST_7120_PI390587928

Source Contig U35_10463

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7120_PI390587928	Hv_44K_v2	TAGAATCCCCACGGGCTTGAAAACCACTTATGCCAAAAAAGGCCTTAGCGTAGCAAAAAA	357	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.635	1.652	1.044	0.864	0.430	0.466
Raw	446.277	715.952	398.976	520.271	88.782	106.251

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_54555.4	2729	5e-22	2628 - 2682	100	55 / 55	plus
JLOC1	JLOC1_54555.3	2377	5e-22	2276 - 2330	100	55 / 55	plus
JLOC1	JLOC1_54555.2	1570	5e-22	1469 - 1523	100	55 / 55	plus
JLOC1	JLOC1_54555.1	1559	5e-22	1458 - 1512	100	55 / 55	plus
Harvest21	ABC20157	428	3e-25	358 - 417	100	60 / 60	plus	ABC20157
Harvest21	ABC48312	631	2e-22	98 - 152	100	55 / 55	minus	ABC48312
Harvest35	U35_10463	428	3e-25	358 - 417	100	60 / 60	plus
Harvest35	U35_47341	631	2e-22	98 - 152	100	55 / 55	minus

Contig Sequence (428 bp)

>U35_10463 428 Hv_44K_v2
AAGTCCCCGTACGGTACCTAGCTAGTTTCAACCTTGACATGGCTTAACCGGTCGGTCTTT
TGGTCACCGTCATGATGATTTCAGCAGACCACCAACGCCAATGCAATACCGACTCTCGAG
TTTTGGATGGTGAGAAGCAGGAGGGATCCTTTTTTTGTGCTCTGCCTGCTGCCTTGCAAA
ACTGAAAGTCTCAGAACATGTAATTACCTCCTAGAAAACCCCTTAGACCTTGTTTGGTGC
GCAGGGTTTGGGGAGGTTTCTAGGGGATTATCCCCGAGTGGGTCAGAAACCCCACGATTC
CCTGCATGTTCATTTGGCGGACAGGGTTTGTGAAAGAGAGGGATTCACCAAATCCCCTAG
AATCCCCACGGGCTTGAAAACCACTTATGCCAAAAAAGGCCTTAGCGTAGCAAAAAAAAA
AAAAAAAA

Homology of Contig U35_10463 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None