barSeed - Barley Seed Development Database

Probe CUST_711_PI390587928

Source Contig U35_19461

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_711_PI390587928	Hv_44K_v2	AAAGAATGTGTGATGAATCCAAAGCCCGCATAAAGATTCTTGATGGCCCACCAGGTGTTC	569	GeneList: skyblue3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.288	1.164	1.369	0.995	0.586	0.611
Raw	85.080	104.133	126.546	140.367	29.418	33.495

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362627	1921	2e-24	584 - 643	100	60 / 60	plus	ABC08682
MLOC	MLOC_20396.1	1604	2e-24	1051 - 1110	100	60 / 60	minus	ABC08682
MLOC	MLOC_20396.2	1437	2e-24	884 - 943	100	60 / 60	minus	ABC08682
MLOC	MLOC_20396.3	1491	2e-24	938 - 997	100	60 / 60	minus	ABC08682
JLOC1	JLOC1_14128.2	1588	8e-25	507 - 566	100	60 / 60	plus
JLOC1	JLOC1_14128.1	1753	8e-25	505 - 564	100	60 / 60	plus
Harvest21	ABC10772	665	3e-25	570 - 629	100	60 / 60	plus
Harvest35	U35_19461	665	3e-25	570 - 629	100	60 / 60	plus

Contig Sequence (665 bp)

>U35_19461 665 Hv_44K_v2
GCTCTCGACCCAAATCCCCTCCCCCGTGCTCCTTCGCTCCCGTCAAAACCCTCGCCCACA
CCTCTCCCGCGGCGGCGGCGGCGGCGGCGGCGGCCGTGCTTCCTCTCCGGCGAGGCCTGA
TTCCACATCCGTACAAGAGAATATGGATGGGCCTGCTGAGACTCCTGCTGTCGTGGAGCA
TGAGATGAACGACATCCCTGATCCTACCAGCGGCGAGCAAGCCGATGCTAGCATTGAGGG
ACAAGCCAATCCTGAGGAAGAAGCAGAAAAGCCATCTGCTGACGAGGAACCCAAAGGCAC
AAACAACGAAGAATCTGAGAACCCCAGCGATGAAGCGCAGGTGACTGTGAAAGATGAGGA
TATGGGGGATCAGAACAGAGAGGACCAGGCTATTGGTTCACTTGAAGAGCCAGCAAACGT
TGATGGTGGGGAAGCTGAGGCAGACCAACTGGCCAATGTGGTGGCGGAAGACACGAAATG
GCCTGGGTGGCCTGGAGAAAGTGTGTTCCGTGTACTGGTTTCTACCCAAAAGGTGGGTGC
TCTCATTGGCCGCAAAGGGGAGTTTATCAAAAGAATGTGTGATGAATCCAAAGCCCGCAT
AAAGATTCTTGATGGCCCACCAGGTGTTCCAGAAAGAGCTGTAATGATTTCAGCAAAGGA
CGAGC

Homology of Contig U35_19461 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g02690.1	528	2e-62
Arabidopsis v10	None