barSeed - Barley Seed Development Database

Probe CUST_7115_PI390587928

Source Contig U35_10469

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7115_PI390587928	Hv_44K_v2	CCTGAGCTAGCAGAAGCCGATATGGTTGTTTTTCTTGGTGATTTCAACTACCGACTTTAT	797	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373688	3935	2e-24	2502 - 2561	100	60 / 60	plus	None
MLOC	MLOC_11306.1	2412	2e-24	1710 - 1769	100	60 / 60	plus	None
MLOC	MLOC_11306.2	2665	2e-24	1963 - 2022	100	60 / 60	plus	None
JLOC1	JLOC1_7482.4	3185	8e-25	1654 - 1713	100	60 / 60	plus
JLOC1	JLOC1_7482.3	3209	8e-25	1678 - 1737	100	60 / 60	plus
JLOC1	JLOC1_7482.2	3469	8e-25	1938 - 1997	100	60 / 60	plus
JLOC1	JLOC1_7482.1	3473	8e-25	1942 - 2001	100	60 / 60	plus
Harvest21	ABC19583	857	3e-25	798 - 857	100	60 / 60	plus
Harvest35	U35_10469	857	3e-25	798 - 857	100	60 / 60	plus

Contig Sequence (857 bp)

>U35_10469 857 Hv_44K_v2
TTGAAGGTAACCCTCTGGGAGGATGGACCGGACATAGCTGTCCAGTCATTCAGATGGCCG
TTGGTGGTTCTTACATCTTTACTCTAGCCCATCATGGTGGTATTCGAGGATGGCCTCTAA
CTTCTCCTGGGCCTCTGGATGATATTCTGCGAACGGAATTGGCGAAGAGGGAGTTGTCCT
ATACAAGGGTAGAGAACATTAAGATGCTTGTTGGAACTTGGAATGTTGCACAGGAGAAAG
CATCACCTGAATCTCTTTGGTCATGGTTGGGTAGTGCATCATCTGATGTTGGATTGGTGG
TGGTTGGCTTGCAAGAGGTTGAGATGGGTGCTGGAGTTCTTGCCATGGCTGCAGCTAAAG
AAAGTGTAGGGCTTGAGGGCAGTGCCAATGGGCAGTGGTGGATAGATAATATTGGCAAGA
CACTTGATGAGGGGATATCCTTCCACCGAGTTGGCTCGAGGCAGTTGGCTGGATTACTTA
TTGCTGCATGGGCAAGGACAGACCTTAAGCCACATATCGGTGATGTTGATGCTGCTGCGG
TGCCATGTGGCTTTGGACGCGCTATTGGCAACAAGGGTGGTGTTGGGTTAAAAATGAGAG
TTTACGATCGTAGGATATGTTTTGTGAACAATCATTTTGCCGCACATCTAGAAAATGTTA
CTCGTCGCAATGCTGACTTTGATCATATCTATCGGACAATGAATTTTAACAAACCTCATG
GATCTGCAGCTTCTGACACGTCTGTCCAATTGCATAAAGCAGTGAATGCCAATGGGAATC
AGCCTGATGAAGATAGACCTGAGCTAGCAGAAGCCGATATGGTTGTTTTTCTTGGTGATT
TCAACTACCGACTTTAT

Homology of Contig U35_10469 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g41270.2	1011	4e-170	protein\|endonuclease/exonuclease/phosphatase family domain containing protein, expressed
Brachypodium v1_2	Bradi3g40800.1	1110	6e-180
Arabidopsis v10	AT1G65580.1	1101	8e-124	\| Symbols: FRA3 \| Endonuclease/exonuclease/phosphatase family protein \| chr1:24377598-24383940 REVERSE LENGTH=1101