barSeed - Barley Seed Development Database

Probe CUST_710_PI390587928

Source Contig U35_19462

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_710_PI390587928	Hv_44K_v2	GCCATGTACCGTGTTTAAAAGGCAAAAAGAAATACCACAGATCGCTGTTCGTTCAAAAAA	1010	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.635	1.918	1.208	0.795	0.359	0.419
Raw	514.620	943.517	512.612	522.216	83.130	105.533

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_37778.1	2890	1e-22	2798 - 2853	100	56 / 56	plus
Harvest21	ABC11869	1081	3e-25	1011 - 1070	100	60 / 60	plus	ABC11869
Harvest35	U35_19462	1081	3e-25	1011 - 1070	100	60 / 60	plus

Contig Sequence (1081 bp)

>U35_19462 1081 Hv_44K_v2
GCAGGACAGCCGATGCTTCTACGTGGTGTCATCAGATGGGACCCAAACAGACTTCTCCTA
CATCAAGTGCATGGACAACTACGTGAGGAAGAACCACGAGGAGCACGCCGAGCTCATCTG
CGAGATGCACTTCAAGAAGCGCAACCGCGATCGACCACCAGTGGTCGATGGAGGTGCGGC
ACCACCCACTGAAGCCGGGGCGTCTCAGCCGACTCCGGGCGAGCGCTTGGAAGCCGCTCT
GCCAGGCCCGCCGCCAGGAACCCCACCTCCTTCAGCAATCACCCAGCAGGAGGGGACTCC
AGCTTCTCCGGGTGCGACTCCAGAAGATGATCTGCCTCTGCCTCCTCCCCCTCCCCCTCC
ACTGACCCAGCGTGGGGATGGAACACCAGAAGATGATCTGCCTCTGCCTCCTCCCCCTCC
ACTGACCCAGCGTGGGGATGGAACACCAGAAGATGATCTGCCTCTGCCTCCTCCTCCTCC
ACTGCCCCAGCAGGAGGCTGAGACGCCAGGTTCAGCGCCAGAGGCAGGAGGCGCCGATGA
CAAGTGGGGGGCGGGAGGTGCCGATGATGAGTGGGGGGCGGGAGGCGCCGACGACAAGTG
GGTCTAGTGGTTGCTTAGGGTGTGGAACTGAACTGAACTGAACTGGTTGTACATACATGG
TCGTAGCGTCCCGTGCTGAAAAACCTTTCTGCTTGCCCTGACAGACTTGATGTAGAGGGG
TGGTGGCAGTAGCCGTTGTTAGACCTGATGGGCTGCATTTCCCTGTCGTGTGCGATGCGC
TCTTCCGGATGAACCATGTAACATCTGGGAGGTATGTCGCCCCATGTGCTGCCTATGGTT
ATCGCCGCTAGTTTCAACATCTCCTTGGTTTCTGGTTGGCGTGGTGTGGCTGTTTACTTC
CTCTGTTTCTTTTGGAATATCTGGGGAGCATTTTCCTAGCGAGCTCCAACCACAAAATGA
AAGTTGCCATAGCAATTTTCTAAGAATTGCAATGTTTGGTGGTGAAAACTGCCATGTACC
GTGTTTAAAAGGCAAAAAGAAATACCACAGATCGCTGTTCGTTCAAAAAAAAAAAAAAAA
A

Homology of Contig U35_19462 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None