barSeed - Barley Seed Development Database

Probe CUST_7107_PI390587928

Source Contig U35_22448

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7107_PI390587928	Hv_44K_v2	AGACCGTTGTAAAATGTGGGCATATCATGTATTCCCTCCGTTCCTAAATATAAGTCTTTT	615	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15396.4	3673	2e-24	3568 - 3627	100	60 / 60	plus	ABC20774
MLOC	MLOC_15396.5	3482	2e-24	3386 - 3445	100	60 / 60	plus	ABC20774
MLOC	MLOC_15396.7	1378	2e-24	1274 - 1333	100	60 / 60	plus	ABC20774
MLOC	MLOC_15396.2	2848	2e-24	2744 - 2803	100	60 / 60	plus	ABC20774
MLOC	MLOC_15396.3	2703	2e-24	2599 - 2658	100	60 / 60	plus	ABC20774
JLOC1	JLOC1_10558.1	2425	8e-25	2339 - 2398	100	60 / 60	plus
Harvest21	ABC20774	702	3e-25	616 - 675	100	60 / 60	plus	ABC20774
Harvest35	U35_22448	702	3e-25	616 - 675	100	60 / 60	plus

Contig Sequence (702 bp)

>U35_22448 702 Hv_44K_v2
ACAGCTGTCCGGTGGCCAGAAGCAGCGGGTGGCAATTGCAAGGGCCATACTGAAGGACCC
TAAGATACTACTACTTGATGAGGCGACTAGCGCCTTGGATGCTGAGTCCGAGCGGATTGT
GCAGGATGCGTTAGACCATGTGATGGTCGGCAGGACCACGGTTGTTGTGGCTCACCGCCT
CTCGACGATCAAAGGTGCTGATATCATTGCGGTTCTTAAGGAAGGCACAATAGTTGAGAA
AGGAAGACACGAGGTGCTGATGAACATTAAAGATGGGGTGTACGCTTCACTAGTAGAACT
TCGTTCAGCGTCATCATAATACCTAGGATCAGTTTTGGCTCATATCTCTACGCACATTGT
ACATCTTCCCTGACCACCTTTTCTTGTTATTGCTGTTGTTGCTATAACTGCGCTACATTA
TTCTTTGGGACTTGAAGAGGAATCCAAAACTAGAATGAAATTTCTTGTGTCTGTGTAGCG
TAAGATTGTAATCATTTTATTAGGAAATCTTGTGCTTCTGGTTTTGATTCTGATTTTGAA
ATGTAAAATTCCCCACGTCGATGTGTAAATGAGTGTAATGTTCTGCTGTACATAATGCCT
AACATAAATATTTGAAGACCGTTGTAAAATGTGGGCATATCATGTATTCCCTCCGTTCCT
AAATATAAGTCTTTTTATAGATTCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_22448 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g50160.1	1275	1e-52	protein\|MDR-like ABC transporter, putative, expressed
Brachypodium v1_2	Bradi2g47410.1	1274	2e-52
Arabidopsis v10	None