barSeed - Barley Seed Development Database

Probe CUST_7105_PI390587928

Source Contig U35_34421

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7105_PI390587928	Hv_44K_v2	CCTGTGCCCCATGCGACTTTGTAGAGATTAAAAGTAATGTTAATGGGATGTTCTTCTGAC	396	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74303.2	3682	7e-23	21 - 80	98	59 / 60	minus	None
MLOC	MLOC_74303.1	3524	7e-23	90 - 149	98	59 / 60	minus	None
JLOC1	JLOC1_49514.1	3490	4e-23	3340 - 3399	98	59 / 60	plus
Harvest35	U35_34421	456	3e-25	397 - 456	100	60 / 60	plus

Contig Sequence (456 bp)

>U35_34421 456 Hv_44K_v2
TGGAGACGTAGCTTTTCCTAAAGGGAAGGAAAACCTGGCTTCAGTTCTCAAGCGGTACAA
GCGTAGGCTGTCGAGCAAGCCCTCTGTTGGGCAATAGTGGCATCTTTTTGCTTGTTTTGT
AGGGTTTCTGGCGCTGTCCTAGTGGCAGGTCGCCCTTTCCTGCTTCTCAAGCCCTAGTGG
TTTTTTCGTTGCGACGTTTCTAAGGGGGTGCCTGGGAGCTCCTTGACCTTTTTGGGCCCT
TTGGTTTTTGCATGTGATGCTTGACAGGGCCCAAGGATTATGCAGGGTAAACCATGTTTG
CTGCCAAGCGCGGCGTGTAAGAGAAAGTGCCATGTGCTGAATCAGTGGTGTAAAGTCCAC
TGCAGCTCAACCTGACTGTTTTTTGGGCCCTCTGTGCCTGTGCCCCATGCGACTTTGTAG
AGATTAAAAGTAATGTTAATGGGATGTTCTTCTGAC

Homology of Contig U35_34421 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None