barSeed - Barley Seed Development Database

Probe CUST_70_PI415269222

Source Contig TA40810_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_70_PI415269222	Hv_44K_v2	TTGTTGATGGCTCTGCAACATATACAAACATGTTTTGATGCAAACCACGACACACTCATC	458	GeneList: floralwhite MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.182	0.361	1.316	1.692	1.002	0.810
Raw	4.439	15.443	51.122	99.554	21.469	19.521

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361898	2571	3e-22	1494 - 1552	98	59 / 60	plus	ABC10502 ABC42630
MLOC	MLOC_18304.1	3106	3e-22	1533 - 1591	98	59 / 60	plus	ABC10502 ABC42630
JLOC1	JLOC1_12667.1	2033	1e-22	637 - 695	98	59 / 60	plus
Harvest21	ABC10502	1554	5e-23	480 - 538	98	59 / 60	plus	ABC10502
Harvest35	U35_4021	1550	5e-23	480 - 538	98	59 / 60	plus

Contig Sequence (649 bp)

>TA40810_4513 649 Hv_44K_v2
GTCGGCATCCCCAACGAGACTGCTCATGAACATGGCCACCAGCATGAAGGCCGCCGACAA
GTGGGTCGAGAAGAACGTCTCCCACTACCTCAACAAAGGCTGCAACGTCAGGTATGTTGC
GGTTGGTAATGAGCCTTTCCTGTCGACATACAATGGAAGCTTTCTGCAAACTACTTTTCC
TGCCCTCAAAAACATACAAAGTGCACTTGTGAGGGCTGGGTTGAGCAGTCAAATCAAAGT
AACTGTTCCTCAGAATGCTGATGTCTACGATACATCAACTGGCAAGCCTTCTGACGGGGA
TTTTCGCACAGATATTCACGATAAGATACTCGAAATTGTGAAGTTTCTGAGTGATAATAG
CGGTGTTTTTACTGTCAACATCTACCCTTTCATAAGCCTCTACATTGATCCAAACTTCCC
CGCCGAGTATGCTTTCTTTGACGGGCGCTCACAGCCCGTTGTTGATGGCTCTGCAACATA
TACAAACATGTTTTGATGCAAACCACGACACACTCATCTGGGCTCTGAAGAAGAATGGAT
ATGGGAATCTGCCGATCGTTATTGGGGAGATAGGCTGGCCAACTGATGGTGACATGAACG
CAAATGCTCAGCTCGCCCAGCGCTTCAACCAAGGCTTCATGACACACAT

Homology of Contig TA40810_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g04670.1	490	1e-80	protein\|glucan endo-1,3-beta-glucosidase precursor, putative, expressed
Brachypodium v1_2	Bradi3g03520.1	491	1e-92
Arabidopsis v10	AT5G58090.1	477	3e-78	O-Glycosyl hydrolases family 17 protein \| chr5:23505556-23507193 REVERSE LENGTH=477