barSeed - Barley Seed Development Database

Probe CUST_708_PI390587928

Source Contig U35_19463

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_708_PI390587928	Hv_44K_v2	GCTCATTTCTGTTTTGATGACGACACAGTTTAACTGATTGCATTATAAGTGCCAAATTAC	2021	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56655.1	2260	2e-24	15 - 74	100	60 / 60	minus	ABC11952
JLOC1	JLOC1_36667.1	2221	8e-25	2111 - 2170	100	60 / 60	plus
Harvest21	ABC11952	2104	3e-25	24 - 83	100	60 / 60	minus	ABC11952
Harvest35	U35_19463	2104	3e-25	2022 - 2081	100	60 / 60	plus

Contig Sequence (2104 bp)

>U35_19463 2104 Hv_44K_v2
GCTCTCTCTCGCCCGAACCTCCTCCGCTCCACGCTACAGAACAAATAGTAGGAGGGGAGC
GATCTTCTTCCGCCGCCCCGCTCGGTCCTGCAATGGAGGCGTGACCCGTGAGCGGTGGTT
GGCGCCGTAGGGGGATAGGGAAGGTCCAAAATTTCGGGCGTTTGAGCAGTTCTAGGCTAG
CATGGGCAAGTCCCCGGCGAAGTGGATTAAGTCGGTGATCCTCGGAAAGAAATCAACCAA
GTCCAGTTCCGTCAAGGCAAAGGATTTGCCGAAGGCTGGAAACGGGAAGGAGCCTGAATT
CTCTGATAATTCTCCCCTGATCTCCGAGCCGGTACTTGTTAGCTCCCACAACAATGGAAT
TGCGTCAGAAATTTCCAACTTGCCCAATGGGAGCGCAATGGAAAACATGGTTAGAATTGG
GTCTGACGTGCAAATTAGTCCCGAGAAACTGAGAGAAGAACAAGCAGCAGTGAAGGCGCA
AGCGGCTTTTCGAGGTTACCTGGCACGCAGGGCCTTTCGCGCATTGAAAGGCATCATCAG
ACTTCAGGCACTGATTCGAGGGCATCTTGTAAGGAGGCAGGCTGTTTCAACCCTTCGTGC
AACATGGTTGATTGTGAAGTTCCAAGCTCTAGTTCGTGGGAGAAATGTTAGATCTTCCAG
TGCTGCCATGCAGTTAGCTGTGAAGTTTGGCCAACATAAGTATGGGGGTGACAGGTCGTC
TGATGCATGGAAGGAGAAGCTATCTTCACATCCATATGTTCAAAAGCTTCTGTCTTCACC
AGTTTTGGTACAAGCTCTTCACGTTCAGTATGACGAGACGAACCCCAATTCAGCCCACAA
CTGGCTGGAGAGATGGACAATAGGCTGCATCTGGAAGCCTGTTTCCAAACCAAAACTAGT
TGCTGATGGGAAACCGCAAGTAAGGAAGGCCAGTTATACCATGGAAACTCACTCAGCAAA
GTTAAAGCGCAATGTTCGGAAGTCTTCTGCTGCCACTGTTGAGACTCAGACAAACACCGT
AGAAACTGAAAAATGGAAAAGAAACCCACGGAAATTCAATGGCTCACCTGCTGATTCAGT
ACCAGATAGCCAGTTATCTGAACTTGAGAAGGTTAAAAGGAACCTTAAGAAGGCAGCTAA
CTCCATGGCTGAAGCCTCTAAGATATCTACAAAGGCTGATGCCCCCAAGGCATCCAATTC
CATAGCTCACGAGCCGAAGATATTTGGTTCCATGGCTGAACCCTCAGAAATATCCAGCAT
ACTGAACGGTATCTCTGACCATCAAGACAGCAAATGCGAGAAAGCACTAGAGAGTACACG
CGAGGCTCTGTTTGCACCTGAAACTCAGGATTCTCACAGTGGCAATCTTTTGGAAAATTC
AAATTTGGATAAGCTGGCATCTGATACAAAATATGATCTAGAAACGCCATTCTTAACTGG
GGACAAAGTTAATGAACCCACTACTGTCTCTCAAGCAGATGAAGTGAACCTTGATAACGG
ATATGATATTACAGAAAGGAAAGAAGAGACTAGGTCCAAGGAAGAACCTCTGCCTAATGG
AAGCCTTAGAACCAAGAGAAGGTCTTCGTTCTCTAATTCAGAATACCCGGAGAGTGGAAC
CAAGAATACTCCAGTTCCATCAAGGAAGCCAAGCTATATGGCTCCAACAGAATCGTTAAA
GGCAAAATTGCGAGGACCACCCAGATTAGATTCTGATCTGCCAGTGGACAAGAATGGCTT
CACTCGCCGTCAGTCTCTTCCTTCTGCTGCAAACAATAGAGGAATCAAAACTGAATGGAG
ACGGTGAAGAGGCTATCAAACTTCCATCAGAAGGGTGCATTGTTGTGGATGAAGTCTGCT
GCTGTCTACCTGTCTCTGTACTTGTTGTTCTGTCTACGTTGTAAGCATATGTTGTTACGC
CCGTTTCGAGCTGCTTGTGATGATATCTTTGGTGCTATTTTTTTTCACGAGTTATCTGTA
GTTCCTCTGAGTGTATTAAAATGTATAGCTACAGTTATTTGGCTCATTTCTGTTTTGATG
ACGACACAGTTTAACTGATTGCATTATAAGTGCCAAATTACAAGTCTAAAAAAAAAAAAA
AAAA

Homology of Contig U35_19463 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g51840.2	575	0.0	protein\|IQ calmodulin-binding motif family protein, putative, expressed
Brachypodium v1_2	Bradi2g48210.2	555	0.0
Arabidopsis v10	AT1G74690.1	587	2e-56	\| Symbols: IQD31 \| IQ-domain 31 \| chr1:28061498-28063924 REVERSE LENGTH=587