barSeed - Barley Seed Development Database

Probe CUST_7089_PI390587928

Source Contig U35_46406

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7089_PI390587928	Hv_44K_v2	AAGAAGCACAGGGCCGTCTACGAGACGCTCGGCGACTCCGACCAGAAGCTGCAGTACTAC	219	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374589	1544	7e-23	421 - 480	98	59 / 60	plus	ABC23293
MLOC	MLOC_35750.1	1502	7e-23	298 - 357	98	59 / 60	plus	None
MLOC	MLOC_35750.2	1006	7e-23	287 - 346	98	59 / 60	plus	None
JLOC1	JLOC1_23029.1	702	4e-23	285 - 344	98	59 / 60	plus
Harvest21	ABC46499	279	3e-25	220 - 279	100	60 / 60	plus
Harvest35	U35_46406	279	3e-25	220 - 279	100	60 / 60	plus

Contig Sequence (279 bp)

>U35_46406 279 Hv_44K_v2
GACGCGGAGGAGGAAGCTCTCCCCGGGGCCGCCGGCGCCGGAGGCGGCGGCGAGGTGAGC
TCGGCAGAGTGGCAGCGATGGGGCACCTACTCGCCCCTCCCGACCGTGGTGGCCTCCGTC
GTCCACCAGCTGCTCGAGATGGAGTCCTCCGCCGGCGAGAACATGCGCTTTGGCGGCGTC
GGCTCCAAGCTCAAGGGCGATTGCAAGGACGTGGAGGACAAGAAGCACAGGGCCGTCTAC
GAGACGCTCGGCGACTCCGACCAGAAGCTGCAGTACTAC

Homology of Contig U35_46406 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None