barSeed - Barley Seed Development Database

Probe CUST_7084_PI390587928

Source Contig U35_46409

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7084_PI390587928	Hv_44K_v2	TACAAAGGGAGTTGTCTTATATTTTGATCATATCAATCCGTTCCGGACAATGCTCCCTGG	279	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_81480.1	619	2e-24	417 - 476	100	60 / 60	plus	ABC03729
JLOC1	JLOC1_54202.1	459	8e-25	256 - 315	100	60 / 60	plus
Harvest21	ABC46503	646	3e-25	280 - 339	100	60 / 60	plus
Harvest35	U35_46409	646	3e-25	280 - 339	100	60 / 60	plus

Contig Sequence (646 bp)

>U35_46409 646 Hv_44K_v2
CAAATGAAGCTCCTCGGCTATCACCCCAGGATTTGACGTTGCATCCTAAGATTCTGGAGA
ACAACAATGTCGTGCTCGCTGACCGCATACAATTGACTCCGTAGCAACAAGGATGATCGT
GCTCGCTGACAGCATACAATTGACGCCGTAGCAACAAGGACAACGGTAGCAACCCTGGTG
GTTACCTCCCGACTCACTATGAGAAAGCCGAGATGCTTCTCAGCGACCGCTTCCTTGGAT
TCCACTCCCTCTGTATCAAATATAAGATGTTTTCTTATATACAAAGGGAGTTGTCTTATA
TTTTGATCATATCAATCCGTTCCGGACAATGCTCCCTGGAACAACAACTTCATGGGAGTG
AAGCACGGCCCACAGATGAAGTACATTATGAAGTTGGGGACGCCTCGAGACTTGTACCAT
GAGGACCACAGTGACATGGATGAAGTTCGTAAGACACCATGCTGTAGCGCGCCCTCCACC
CTGTCTTTTAACACATGGAGACCTACAGTGAATTCTTGGCAGTTTTGAATAGAGAGATCC
CTGTAACTCGTAACTTTGACCTGCAATGAAGTATTCAAAGTTTCGAATACAGATTGTATG
CTTTCTGTTGTAAGCCTCCCCCTTCATGCGGGATGATGTATATACT

Homology of Contig U35_46409 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None