barSeed - Barley Seed Development Database

Probe CUST_7081_PI390587928

Source Contig U35_22453

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7081_PI390587928	Hv_44K_v2	AGTTAAAGTAACAGCTGGTGTACAACAAAATGGAATTGCTGGGGATTGCAATGGCGTCAC	645	GeneList: darkgrey MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.487	0.638	1.186	1.700	1.056	0.976
Raw	4.088	8.780	16.926	37.260	8.368	7.797

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_19593.1	3392	2e-24	1072 - 1131	100	60 / 60	minus	ABC12652
MLOC	MLOC_19593.2	1738	2e-24	869 - 928	100	60 / 60	minus	ABC12652
MLOC	MLOC_19593.3	1998	2e-24	864 - 923	100	60 / 60	minus	ABC12652
JLOC1	JLOC1_13574.2	1887	8e-25	823 - 882	100	60 / 60	plus
JLOC1	JLOC1_13574.1	1837	8e-25	773 - 832	100	60 / 60	plus
Harvest21	ABC17483	847	3e-25	646 - 705	100	60 / 60	plus
Harvest35	U35_22453	847	3e-25	646 - 705	100	60 / 60	plus

Contig Sequence (847 bp)

>U35_22453 847 Hv_44K_v2
GAAAGATACAGGAGACACAAGGATCACTGAGGAAAGGTCATGCACACCACATGACTTAAA
TCTTAGTCAACCAAATAATTCTGGCCTTAATAGTTTGAGTGCGTGTGAGAACCAGACATC
CAACGGTGATGAGATGACTGAACCAGAATCCAGACTGGAAGCAGCTAAGACCGAGGGCGA
CGGATCAAGCAAAGAGAAGGTCCTAAAGAAGCCAGATAAGATTCTGCCATGTCCTCGGTG
TAACAGCATGGATACAAAGTTCTGTTACTACAACAATTACAACATCCACCAACCAAGGCA
TTTTTGTAGGGGTTGTCAAAGGTATTGGACGGCAGGTGGAAGCATGAGAAACCTCCCTGT
CGGTGCTGGTAGGCGCAAGAGTAAGAGCTCCAGTACAAACTGCCACGGTATATTTATTCC
AGGAAGCAGTCTAGCACCTCCTGGAATTCCATTGCCTATAAAGGAAAATCAACCAGCAGT
TAAGTTTGGGTCTGATTCCACTCTATCTAACTCCATGGCTTCTTTGTTGAGAGTTGAAGA
GCAGAATAAGAACAGCAACCTTGCCTCAACAGCACATCCCAGAAATGGTGAGAACCAGAC
ATGTCCACCTTCAGCAACAACTTCAGATAATCCACGGACCGAGTCAGTTAAAGTAACAGC
TGGTGTACAACAAAATGGAATTGCTGGGGATTGCAATGGCGTCACTCCCATGCCTCCTAT
ACCATGCTTTCCCGGCCCTCCTTTTGTGTACCCATGGAATCCAGCATGGAATGGTGTTCC
TGCCATGGCAGCACCAGTATGCCCAGTCCCAGCTGAACCAGCAAATTGTTCAGAAAATGG
CAATGGA

Homology of Contig U35_22453 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g48570.1	477	4e-106	protein\|expressed protein
Brachypodium v1_2	Bradi1g17410.1	444	1e-118
Arabidopsis v10	None