barSeed - Barley Seed Development Database

Probe CUST_7078_PI390587928

Source Contig U35_1148

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7078_PI390587928	Hv_44K_v2	AGGAACAATTGAACAACTATTTGAAGGCCACCACATTAATTACATCGAGTGCATTAATGT	1128	GeneList: ivory MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.917	1.025	1.468	1.186	1.016	0.761
Raw	293.415	463.380	640.754	734.851	240.345	201.601

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249855.1	3930	2e-24	1083 - 1142	100	60 / 60	plus	ABC03678
MLOC	AK371168	4242	2e-24	1119 - 1178	100	60 / 60	plus	ABC03678
MLOC	MLOC_78081.2	793	2e-24	127 - 186	100	60 / 60	minus	None
MLOC	MLOC_78081.1	1159	2e-24	157 - 216	100	60 / 60	minus	ABC03678
JLOC1	JLOC1_52042.1	1210	8e-25	936 - 995	100	60 / 60	plus
Harvest21	ABC14298	996	3e-25	937 - 996	100	60 / 60	plus
Harvest35	U35_1148	1188	3e-25	1129 - 1188	100	60 / 60	plus

Contig Sequence (1188 bp)

>U35_1148 1188 Hv_44K_v2
AAAAATTTAGAATTTGTCATCTCCTCATGCTGTGACCTGCTGGACCCGGGAAATCCCCTC
GAACATCCTGTCTCCATTTCCCCAAGCTCCTCCCTGTCCGCCGCCTATCGCCTTACGCCT
CCCGCTGCCGCTGCCGCTGCCTGGCCGCGCGCGGCAGCCCGCCTCACAGATCTCTAACCC
ATCATCGGCCACCGCCGCCAGCGACGACGGCTCCATGACTATGATGACCCCTTCCCCCCT
CGAGCAGCAGGAGGAGGACGAAGAGATGCTGGTGGCACACCAGGAGCTCTCCGCCGCAGA
CTCCGCGCAGCCAATGGAAGTGGTGGTGCAGACGGAGCCTGCGAATACGGCGGAGAGCCA
AGCACCTGAGGACCCGCAGACGTCCCGGTTCACCTGGACGATCGAGAACTTCACCAGGCT
CAGTGGGAAGAAGCACTACTCGGATATGTTCGTCGTTGGCGGATTTAAATGGCGTGTGCT
AATTTTTCCCAAGGGAAATAATGTGGACCATCTCTCGATGTACTTGGATGTTGCAGACTC
GGGGAACCTCCCTTACGGATGGAGCCGGTATGCTCAGTTCAGCCTAGCCATTGTAAACCA
GATCCATCAGAAGTATACAGCACGCAAAGATACTCAACATCAGTTTAATGCACGTGAGAG
TGACTGGGGTTTCACATCTTTTATGCCTCTGAGTGAGCTGTATGACCCAAGTAGGGGCTA
TCTCGTGAATGATACTGTTGTTGTTGAAGCTGAGGTTGCTGTTCGCAAAATGGTTGACTA
TTGGACTTATGACTCGAAAAAGGAAACAGGTTATGTTGGTCTCAAGAATCAGGGTGCTAC
CTGTTATATGAACTCTCTTCTGCAAACCCTGTATCATATGCCTTACTTTCGGAAGGCTGT
ATATCATATGCCAACTACTGAGAATGACATGCCATCTGGGAGTATTCCTTTAGCCCTGCA
GAGCCTTTTCTACAAGCTCCAGTATAGCGACAATAGTGTAGCTACAAAAGAGTTGACTAA
ATCTTTCGGGTGGGACACTTATGATTCTTTCATGCAGCATGATGTGCAAGAGCTCAACAG
AGTTCTATGCGAGAAACTTGAAGACAAAATGAAGGGAACTGTTGTGGAAGGAACAATTGA
ACAACTATTTGAAGGCCACCACATTAATTACATCGAGTGCATTAATGT

Homology of Contig U35_1148 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os12g30540.1	1126	protein\|ubiquitin carboxyl-terminal hydrolase, putative, expressed
Brachypodium v1_2	Bradi4g07167.1	1119
Arabidopsis v10	AT5G06600.1	1116	\| Symbols: UBP12 \| ubiquitin-specific protease 12 \| chr5:2019545-2027834 REVERSE LENGTH=1116