barSeed - Barley Seed Development Database

Probe CUST_7075_PI390587928

Source Contig U35_19801

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7075_PI390587928	Hv_44K_v2	GGAGAGGCATGGCATGACATGCAAAATATATCGATGCACACAACACTTTTTATTATAATT	520	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357851	1104	2e-24	1033 - 1092	100	60 / 60	plus	ABC12340
MLOC	AK362962	922	2e-24	819 - 878	100	60 / 60	plus	ABC12340
MLOC	AK368357	1053	2e-24	917 - 976	100	60 / 60	plus	ABC12340
MLOC	MLOC_68507.1	1957	2e-24	1073 - 1132	100	60 / 60	plus	ABC12340
JLOC1	JLOC1_45330.1	1956	8e-25	833 - 892	100	60 / 60	minus
JLOC1	JLOC1_45329.2	1455	8e-25	965 - 1024	100	60 / 60	plus
JLOC1	JLOC1_45329.1	1512	8e-25	1022 - 1081	100	60 / 60	plus
Harvest21	ABC12340	660	3e-25	81 - 140	100	60 / 60	minus	ABC12340
Harvest35	U35_19801	660	3e-25	521 - 580	100	60 / 60	plus

Contig Sequence (660 bp)

>U35_19801 660 Hv_44K_v2
GCACGAGGCATCCAGAGGGCCAGGCGGCGCTTGTCGTCGGCGTCTACGCCCGACGTGACC
TTCGTCACCGCCGACTTCTTCACCTGGTCGCCGCCGGAGCCCTTCCACCTCATCTTCGAC
TACACGTTCTTCTGCGCCCTTGACCCGTCGCTGAGGCCGGCATGGGCGGCGAGGATGGAG
GAGCTGCTGCGGCCGGACGGGGAGCTCATCACCCTCATGTACCTGCCTCAAGACCAGGAC
TCCGGGCCACCATACAACACGACAGTGTTCGATTTTACTCTTGTCATGTATGCAGCTACG
AGGAGGTGCTGAAACCACTGGGTTTCTTCATCGAATCCATCGAGGACAATGACGTGGCGG
TCGAGCCGCGCAAGGGGCTGGAGAAGATCGCAAGGTGGAAGAAGACGCCAGCTGGAACAG
AAACACCGATATGATATCACTATCAGACCTGCCCTCTGATAATCTCTAGTTTCCTTGAAA
GATTCATTTTAGGAGTATTTTTCCCTTAAAAGGTTACAGTGGAGAGGCATGGCATGACAT
GCAAAATATATCGATGCACACAACACTTTTTATTATAATTATTTACAAGGTCAATGTATT
GTTGTCATGTTAATGACACATTTTAAACAACATATGTGTGTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_19801 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None