barSeed - Barley Seed Development Database

Probe CUST_7071_PI390587928

Source Contig U35_19805

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7071_PI390587928	Hv_44K_v2	CCCTAAAAGCTGTTTGTTATGGTTGCTGGAATGCCAATAAATTCTGTGTCTGAAGTGATC	771	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.315	0.473	0.987	1.630	1.093	1.421
Raw	727.044	1737.338	3172.063	8003.867	1938.607	2726.727

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354382	858	2e-24	795 - 854	100	60 / 60	plus	ABC12174
MLOC	MLOC_19176.2	659	2e-24	552 - 611	100	60 / 60	plus	ABC12174
JLOC1	JLOC1_13303.1	955	8e-25	818 - 877	100	60 / 60	plus
Harvest35	U35_19805	835	3e-25	772 - 831	100	60 / 60	plus

Contig Sequence (835 bp)

>U35_19805 835 Hv_44K_v2
CGCCAAGGCCGACGCCAAGCCCACCACTCCCAAAAGCGTTGCAGCCCTCCCTCCCTCCCC
TCCCCTCCCATCCTCCTAATCTTGGCTCCGTCCGAGGCAGGGGGGCCGCACGACGACGCG
ATCGATCGCGACCGGAGCGCCGATCGCGCCGCTGGAGGTTCGAGGCCCGGGCGGCGGCGA
TGGGGCGGCTCTTCCTGATGCACCTCGAGGGCAACGCCTACAGCTGCAAGTTCTGCCGCG
CCCACCTCGGCCTCGCCGCCGACATCATCTCCAAGAACTTCCAATCCAAGCACGGCAAGG
CGTACCTCTTCAACAGGGTTGTCAATGTTACATCTGGTATAAATGAGGATCGCATGATGA
TGACAGGGCTGCATACCGTTTCCGATATCTTCTGTGTTGGTTGCGGGTCCATTGTTGGAT
GGAAATATGAGGCTGCACATGAGAAGAGCCAGAGGTACAAGGAAGGGAAGTTTATTCTGG
AGAGGTTTAAGGTGTCGGGCCCCGATGGTAGCCACTACTGGGGGGTCACACATGATGCTC
ATCATGGGGGTGGAAGCGACACCGATGACTTATGAAGCGCGACCGACGTGCGAAAACCTG
CTGTTCATCTCTGTAAATAACCCTGGAGTCGGGCCTTAGTTACTCCGGGGGGCTCGCTTC
CATTCAAAAGCGTCCCTCCGGCGTAAAATTGTTAATTCTAGGTGATATTCTCCCAGCAAG
CTGTCTGGGAGACCTAATACCTTCTGTATATGAACGAATGTATCATGTAGCCCCTAAAAG
CTGTTTGTTATGGTTGCTGGAATGCCAATAAATTCTGTGTCTGAAGTGATCTAGC

Homology of Contig U35_19805 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g49150.1	130	6e-75	protein\|yippee zinc-binding protein, putative, expressed
Brachypodium v1_2	Bradi1g11770.1	130	6e-79
Arabidopsis v10	AT2G40110.1	130	7e-62	Yippee family putative zinc-binding protein \| chr2:16748159-16749357 FORWARD LENGTH=130