barSeed - Barley Seed Development Database

Probe CUST_7069_PI390587928

Source Contig U35_19807

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7069_PI390587928	Hv_44K_v2	GTAACATTTGTACTGAAGTACCCAGCTAGTCCTACTCTTATTTGCACATTGGTTTAAAAA	1764	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.089	1.473	1.230	0.953	0.391	0.465
Raw	716.546	1508.855	1090.965	1350.649	193.030	248.925

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC11582	1836	3e-25	1765 - 1824	100	60 / 60	plus	ABC11582
Harvest35	U35_19807	1836	3e-25	1765 - 1824	100	60 / 60	plus

Contig Sequence (1836 bp)

>U35_19807 1836 Hv_44K_v2
TCGCCATCCCTTCTCTGTTCCTCTGCTCCTCTCCTCGCCACCGTCCCAAATTAGCAGCGC
CTGCAGCTCGCCAGCCCCCCGCTGCCGGCGGAATCCCTAGGTTCTGCCCCTCCGGCGCAG
TCTACCGCCGCATTCGCCGCCGCGTACGCCCGCGGCGGGTGGTAGGCGCGCGCGCTCCTC
GCCGCCGCCGCCGCTGCTGCTGCTGTAAGATCTGAGCGAGCTGCTGCTGCTGCCGTGTGG
GTCCGGGGGTAGGGATACCGTGTTTGGAGGGCGTGGAGGCGGCGTCTATGGCGGGCCCCA
AGTTTGGGTCGTTCAAGTCGGAGACCAAGGGGGACTCGGCGGCCGGCGCCGCGGCGCAGA
GGAGGGACCCGTACGAGGTGCTGGGGGTGGGGCGCAATGCCACGGAGCAGGAGATCAAGA
GCGCCTTCCGCCGCATGGCCCTCAAGTACCATCCAGATAAGAATGCAGACGACCCTGTGG
CCTCGGAGAAATTCCAAGAAGCCACATTCTCTTACAACATCCTCTCAGATCCGGATAAAA
GGCGGCAGTATGATTCCTCTGGATTCGAGGCCATCGAAGCAGATAGTCATGAATTAGAGC
TGGACCTATCAAGTCTCAACACTGTAAATACAATGTTTGCTGCTCTGTTTAGCAAGCTAG
GAGTACCAATCAAGACCACAGTTTCGGCAACAGTTTTAGAGGAGGCATTGAATGGCTCAG
TGGAAATTGCTCAGCTTCATTTGGGCAAATCTGTATGCAAGAAGGTGGAAAAACAATCAG
CTCATTTTTATTCAGTGGACATAACAGAAGAAGAAGCTAAATTGGGGTTAGTGTGTAGAG
TTAGTTCAACTGCTAAAAGTAAATTCAAGTTGCTCTATTTTGAACCTGAAGAAAATGGTG
GGTTAAGCCTTGCTTTACAGGAAGATAGTGCAAAGACCGGGAAAGTTACTTCTGCTGGGA
TGTTCTTTCTTGGCTTTCCCGTGTACCGTTTTGAACATAATAATTCAGCTGCTGCAGCAA
AAGATCCTGATAGTGCATTCTTTAAGAGATTGGATGGCTTTCAACCATGCGAAGTTAATG
AACTGAAAGAAGGGACCCATTATTTTGCTGTTTATGGCGATAATTTCTTCAAAAGTGCAA
CCTATACCTTAGAGGTTGTATGTGCTGAACCCTTTTCCAACGAAAAGGAGAAGCTACGAA
GCGTGGAAGCAAAGATACTTGCAAAACGGTCTGAGCTGTCTAAATTTGATTCCGAGTATA
GGGAGGTTTTAGCAAAGTTCACTGAGATGACCAGCAGATATGCTCAAGAAATGCAAACGA
TCGACGAGCTTCTCAACGAAAGGAATGCCATTCATGCATCCTATACCAACAGCCCAACGC
TAAAGCGGAGTTCCAGTGACAGCAAAGGGAAAACATCCTCTAAAGGGTCCAAAAGTGATG
ATGACCAGAGTGTAAGAAAAGATAAGAAATCAAAGAGTCCGACGACGATGGAGGCCTCAG
CGAGCGATGAAGAGGGCCCTAATAAAAAAGAAAAGAAACCTAAAGAGCGGCTTCGCAGGA
AGAGATGGTTCAACATCCATCATCTGAAAGTGGACAAAAGAAGACCCTGCTGAGAGATGT
ATTGTATCGTCTGAATGTATTATTTTGTGTTGATGATTCCACCTGCAGTGTTCACCTTCT
CTAATCTTTTCCCCCTGTGCTGTACCGATTTGTTTCCTGAAAAGTCAGGAATCTTGGTAG
ATTCGGAAATGTTGTAAAGAATTGGTAACATTTGTACTGAAGTACCCAGCTAGTCCTACT
CTTATTTGCACATTGGTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_19807 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g50760.1	443	0.0	protein\|heat shock protein DnaJ, putative, expressed
Brachypodium v1_2	Bradi3g59670.1	441	0.0
Arabidopsis v10	AT1G24120.1	436	8e-170	\| Symbols: ARL1 \| ARG1-like 1 \| chr1:8529283-8531946 REVERSE LENGTH=436