barSeed - Barley Seed Development Database

Probe CUST_7060_PI390587928

Source Contig U35_1156

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7060_PI390587928	Hv_44K_v2	TAAAAGACAAAGATTATCCAATTGGCCAGTCCTTGTCAACCTTGGGCCTGTCCCTCATGA	986	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65750.5	4718	2e-24	453 - 512	100	60 / 60	minus	ABC06980 ABC49743
MLOC	MLOC_65750.3	4847	2e-24	515 - 574	100	60 / 60	minus	ABC06980 ABC49743
MLOC	MLOC_65750.2	4776	2e-24	523 - 582	100	60 / 60	minus	ABC06980 ABC49743
MLOC	MLOC_65750.4	3385	2e-24	453 - 512	100	60 / 60	minus	ABC06980 ABC49743
MLOC	MLOC_65750.1	3102	2e-24	647 - 706	100	60 / 60	minus	ABC06980 ABC49743
JLOC1	JLOC1_43288.2	4821	8e-25	4179 - 4238	100	60 / 60	plus
JLOC1	JLOC1_43288.1	4851	8e-25	4209 - 4268	100	60 / 60	plus
Harvest21	ABC06980	1510	3e-25	465 - 524	100	60 / 60	minus	ABC06980
Harvest35	U35_1156	1509	3e-25	987 - 1046	100	60 / 60	plus

Contig Sequence (1509 bp)

>U35_1156 1509 Hv_44K_v2
GCTTTTGAAGCTTCAGGATCCTTCTCCTGGGAAGCTTTTTGGGTTCCGCTTGCGCTCCCC
GCCACTTCCTTTCCTGCTATCCTCGCTGTTGCAGTCAAGGGCTCACCCAAAACTTTCCCC
TGACCAGGGTGGTAACGAAGGAGATTCTGATATTGATTTGGATGAGTATTCTGATATAGA
ACAAGATGAAGATGAAGAGGAATATGATCAACTTCCTCCCTTCAAGCCTTTGACCAAAGC
TCAGCTTGCAAGGCTCACAAAAGAGCAGAAGAATGCTTATTTTGATGAGTACGATTACAG
GGTCAAGCTTCTCCAGAAGAAACAGTGGAAGGATGAGCTCCGCAGGTTAAAGGAGATGAA
GAAGAGAGGCAAGTCTGATATGGATGCTTATGGGTATGCTAGTATCGCAGGCGAAAATGA
TCAGGATCCTCCTCCAGAAAATGTTTCAGTTCCCTTACCTGACATGGTGCTTCCTCCTTC
ATTTGATTGTGACAATCCAACATACCGTTACCGCTTTCTGGAACCAACCTCTACTGTCCT
TGCAAGGCCTGTTCTAGATGCGCATGGGTGGGATCATGACTGTGGCTATGATGGAGTAAG
TGTCGAAGAGTCGCTCGCTCTCCTTAACAAATTCCCAGGTACTGTGGCAGTTCAGGTTAC
CAAGGACAAGAAGGAATTTAGCATCCATTTGGATTCTTCCATCTCAGCAAAGCATGGAGA
GGACGCGTCTTCCCTCGCTGGTTTTGACATCCAGACTGTTGGGCGGCAGCTTGCTTATAT
CCTCCGTGGTGAGACCAAATTCAAGAGTATCAAGAAGAACAAAACCACTGGAGGATTCTC
TGTTACTTTCTTGGGTGACATTGTGGCCACTGGGCTGAAGGTCGAGGACCAGCTCTCTGT
TGGTAAGAGGCTGGCGCTAGTGGCAAGCACAGGTGCAATGCGGGCTCAGGGGGATACCGC
CTATGGAGCAAATTTGGAAGCGCGCTTAAAAGACAAAGATTATCCAATTGGCCAGTCCTT
GTCAACCTTGGGCCTGTCCCTCATGAAGTGGCGCCGCGACCTTGCCCTGGGGGCTAATCT
GCAGTCCCAGTTCTCGATTGGAAGGGGTTCAAAGATGGCTGTTCGCCTTGGGCTCAACAA
CAAGCTGAGCGGACAGATCACCGTCAGGACAAGCACATCGGAGCAGGTCCAGATCGCGCT
GCTGGGTCTTGTCCCAGTGATAGCCTCCATCTACCGGAGCTTCCGGCCCGGTGAACCATC
GTTTGCTTATTAGCTTGGCAAGAAGAGCATCTATTTACTTATATCTCATCCATGTGTTGT
GTTAGCAATTTTCCTAATCTCTTAAACCGGTAATCTGTATCAGTTCCATTTTTCCCTTTC
TGCCCCGCAGATTGTTCCTATCATAATTTTGGCTGGAGAGTGTTGTCATATTCATCTGGA
ACTATAGTTCAATAATGTTGGTAGATCTATATGATCCTTCTACCATTTTATCAAAAAAAA
AAAAAAAAA

Homology of Contig U35_1156 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g05950.1	1307	0.0	protein\|TOC159, putative, expressed
Brachypodium v1_2	Bradi2g35587.1	1366	0.0
Arabidopsis v10	AT4G02510.1	1503	3e-165	\| Symbols: TOC159, TOC86, PPI2, TOC160, ATTOC159 \| translocon at the outer envelope membrane of chloroplasts 159 \| chr4:1104766-1109360 FORWARD LENGTH=1503