barSeed - Barley Seed Development Database

Probe CUST_7057_PI390587928

Source Contig U35_1159

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7057_PI390587928	Hv_44K_v2	ACTGGTGATGTAGCTTCCATTTGTAACTAATAAACTATCACATACCGCAATATGTGACCA	526	GeneList: lightgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.101	0.016	0.346	3.796	10.877	36.214
Raw	65.906	12.434	288.815	4914.733	4803.437	17702.063

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_21198.1	801	2e-24	603 - 662	100	60 / 60	plus	ABC03195
JLOC1	JLOC1_14709.1	801	8e-25	603 - 662	100	60 / 60	plus
Harvest21	ABC03196	643	3e-25	513 - 572	100	60 / 60	plus
Harvest21	ABC03195	677	3e-25	527 - 586	100	60 / 60	plus	ABC03195
Harvest35	U35_1159	659	3e-25	527 - 586	100	60 / 60	plus

Contig Sequence (659 bp)

>U35_1159 659 Hv_44K_v2
GCATCTATTCATGTTCACCACTACCAAAACAACATTGACAACATGAAGACCTTCCTCCTA
TCCTTCCTTGCTCTTGTAGCGAGCACTGCTATTGCGCAATATGCGGAAGTTCCCAGCCCA
GCTGCAGAAGTTCCCACGGGGGATGGTTTTGGTGAATGGGTTGCGATGTCGCCTAGTGTG
AGTGGTTCTGAGCAGTGCGAGCAAGAGCAGCCAAAGCTAAACTCTTGTAGTGATTATGTT
ATGGATCGATGCGTGACAAAGGATATGCTGCTCTCTTGGGTATTTCCTCGGACATGGGGG
AAGAGAAGCTGTGAGGAGGTCCAAGACCAGTGCTGCCAGCAATTGAGGCAAACGACGCCG
GATTGCCGTTGCAAGGCTATCTGGACATCAATCCAAGGCGATCTAAGTGGCTTCATGAGC
TTTCAACAAGGTCTGGAAGCTAGAACCTTGCAGACGGCCAAGAGCCTTCCCTCCAAGTGC
AATATTGATCCAAAATATTGTAACATCCCCATCACTAGCGGATATTACTGGTGATGTAGC
TTCCATTTGTAACTAATAAACTATCACATACCGCAATATGTGACCAATAAATATGACAAT
GGAATAATATATACTATAGTTTCCCTTAAAAAAAAAAAAAAAATACAAAATCTAAAAAA

Homology of Contig U35_1159 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None