barSeed - Barley Seed Development Database

Probe CUST_7055_PI390587928

Source Contig U35_19811

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7055_PI390587928	Hv_44K_v2	TGGTGGTTGCTGATTCCAACATCGATCTCGTAAAATTAATCTGACCTTAATCCTAAAAAA	1457	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.402	1.217	1.132	0.942	0.382	0.417
Raw	725.090	1002.940	806.129	1045.912	150.899	178.032

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_40865.1	1576	2e-21	1501 - 1554	100	54 / 54	plus
Harvest21	ABC12790	550	3e-25	12 - 71	100	60 / 60	minus	ABC12790
Harvest35	U35_19811	1528	3e-25	1458 - 1517	100	60 / 60	plus

Contig Sequence (1528 bp)

>U35_19811 1528 Hv_44K_v2
GACAAAACACGCCCCTAGGGTTTTTTCGTGTGCACAACCAAACCCGGCGGCGCCCTCCTC
CGGCCGTCCCCACTCCCCCCTGCCATCCGGAGCCCTCCTCCGCAGCGCCACCGCCCCGGC
GCCCGGCGGCTCGTGTGCTCGCGCGGCCGCCCCTTACCGGCGACCCCCTGGACTTTCCCC
GTCTCGGGCAGGCAGAGAAACGGCGATGACGGCCGCCGTCGCCGGAGCGGACGACGACAG
GAAAGCGCAGGCCCTCGTGCGGGATGACGCGCCCAAGCTGCTCGCCGCTCTCAAGGAAAT
GAAGGACGGGCTCGACCTCGTCAGGTCCAAGGTCGAGTCGCTCACCCGCAAGGTTAGGAA
AAACCAGCTGCCGACAGGCGATGGCATTGGGTACCTGGAGGCCAAGCACCACCTGCTGCT
GAGCTACTGCCAGGACCTCGTCTACTACCTGCTACGCAAGGCCAACGGACTGTCCGTCGA
TGGCCACCCCGTCGTGCGCAGCCTTGTCGAGATCAGGCTATTTCTTGAGAAGATTCGCCC
AATAGACAAGAAGATGGAGTACCAGATCCAGAAGCTCACAAATGCTGCAGATGGTGCGGC
TGCCCAGGATAAGGTGCCAGACGCTGAGGTCAATGTCAAGGGCAGGCAACAAGGCGAGGA
CGACCTGTTGGGGTACCGGCCAAACCCGGATATGATGGATCCCAAAATTGTTCCTGAAGG
ACAGGGCAAAGATGGTATCTATGTTCCTCCGAGAATTGGGCCAGCTGCCATGGATGATAG
TCATAGTAAAGACGCTGTAAGGAAAGAGAAAAGATTATTGCGTATGGCAACAGAGAATCC
TTACTTCAAGGAGATGATTGATGATGCTGCTGATAGACCTGAAGAGTGGAAGGAAACAGC
GGGTGACGAAAGCAAAGAATTTATGGCCTACATGCGGCAGAGAGAGAAGCAAGAGAAGGC
GGAAGAGGAGCTGTTCACCCGAGCTCCCGTAACCAAACGTGAAAAGTACATGGAGAAGCA
GATGAAAAAGCAGCTTCATGGGTTACAAGGCCTGACCGACGGATTCGACCTCGGGATGAA
CACGCTGCTCGATGGCGAGAAGGAAGAAGACGGTGATTCCATTGAGCCACGTAGACAGAG
CGCGGGGCATAGAAAGCATCAGAAAGGCGGCAAGAGGAAGCGGCATTAATTCAGACCTGA
CAATGACAGTCCTCTGAAATTTTGCCGTGTTCTCAATCCAAACAAGAGATTTTGATACCA
CTAGAAACTGAACCAATTGCACACCATAGGAACAGAGATGAAATTTGCCTAGAAGCAGCA
GATGTCCTCGAGACGATTGCCACCTGTTTATCCTCAGCTGTCTGGGTGTGTTTTCCGGTT
CCGACTCCTTTGAATCTGTTATGTGTATGAAAAGATATTCTGTTGAGTATGTATGATCAG
AGAACTGCGAAAGTGCATGGTGGTTGCTGATTCCAACATCGATCTCGTAAAATTAATCTG
ACCTTAATCCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_19811 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g68310.1	336	5e-140	protein\|sas10/Utp3 family protein, expressed
Brachypodium v1_2	Bradi2g59260.1	328	2e-162
Arabidopsis v10	AT1G07840.2	312	1e-82	Sas10/Utp3/C1D family \| chr1:2424603-2426425 FORWARD LENGTH=312