barSeed - Barley Seed Development Database

Probe CUST_7054_PI390587928

Source Contig U35_19812

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7054_PI390587928	Hv_44K_v2	CAATCAGGCACATACACAGAAATGCAAGGCGAACAAACTGGCATGCACAAAGAAATAGAG	86	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372711	1779	7e-23	1285 - 1344	98	59 / 60	plus	ABC25585
MLOC	MLOC_37188.1	1113	7e-23	398 - 457	98	59 / 60	minus	ABC25585
JLOC1	JLOC1_24047.1	1047	4e-23	452 - 511	98	59 / 60	plus
Harvest21	ABC25585	625	1e-23	480 - 539	98	59 / 60	minus	ABC25585
Harvest35	U35_19812	544	3e-25	87 - 146	100	60 / 60	plus

Contig Sequence (544 bp)

>U35_19812 544 Hv_44K_v2
ACAGCAGCAGCACAGGCTATTACTATGATGCTGCATCTGGGTGTTATTGTGCTGCATCTA
CAGGAACATGGTACTCGTACGACGAACAATCAGGCACATACACAGAAATGCAAGGCGAAC
AAACTGGCATGCACAAAGAAATAGAGGGAGACGGGGTCAAGGAGTAGCCAAGGTGTAACA
GTTCGCCCCCAAGCTAGGTGGTTTCTACTCCCCAGTGTTTTCTTGATGCGGTGTAGCTTA
AGTATGCAGTAGAGCTGTAGAGCACCCCTGGATCTCAACTCTCATGGCCGAATTATCACG
AGGAAAAGAGTTGGTTACTTATGGTTGTAGGATGTTAGTTGAAGTTCATGCGATCATCCA
CGGAGCGTTTGCTCGGTCATGAGTTGTCGTTTTTCTCTAACCATTTGCCGACTTGGTTAC
GCCGCCCACCATGTTCATGCAGAAAGAAACCTGTAACATGTGTTATAATACATCACCCTT
TGTGAAATTGGAACTTCACTGTAACTTGTGGGATTCATATAGAAGCAAGACGCTTGTTGT
TCCT

Homology of Contig U35_19812 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None