barSeed - Barley Seed Development Database

Probe CUST_704_PI390587928

Source Contig U35_19466

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_704_PI390587928	Hv_44K_v2	GAATCATTATTCGAATCGTTGCCTGGCCATGGAAATATTTGATCATGTTAAGAGTATTAC	509	GeneList: lightgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.691	0.815	0.507	0.818	0.924	2.057
Raw	7965.587	6154.153	3221.073	8269.470	3345.917	8067.523

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11524.1	604	2e-24	520 - 579	100	60 / 60	plus	ABC11118
MLOC	MLOC_41641.1	490	7e-23	395 - 454	98	59 / 60	minus	None
JLOC1	JLOC1_7636.1	804	8e-25	654 - 713	100	60 / 60	plus
Harvest21	ABC11118	669	3e-25	553 - 612	100	60 / 60	plus	ABC11118
Harvest35	U35_19466	626	3e-25	510 - 569	100	60 / 60	plus

Contig Sequence (626 bp)

>U35_19466 626 Hv_44K_v2
CGACAACCGGCAGCCAAAGGGATACTCCCGCAGATCCATTCTTGGGCGAGAAGAAAGAAG
CAGACAGCAATGGCGGCAGGCGCCTCCTCCGCCGCCTGGAAGCGATGGCTCCGCCCTGAG
GCGTACCCGATCTTCCTGACGACCGGCGTGGCCGTCTCCATCTGCGCCATGCAGCTCATC
CGCAACATCACCACCAACCCGGAAGTCAGGGTGACCAAGGAGAACAGGGCGGCGGGGGTC
CAGGAGAACTTCGACGAGGGGAAGCGCTACTCGCAGCACGGATTCAGGAAGTTCATCGAC
CGCCAGCGCCCCCAGATCATGCCGGCCATCAACAACTTCTTCTCCGACCCTCCCAAGTAT
TAGTTCGGTCCAGGCAGGCCGCGAATACCTCTCTGCGCTGCTCGTTTGTTCCGAAGATTG
TGCCAGGATTTTAGATGCTGTCTATGTTGTTTGTCATAATTCCAATCGTTTACATGCCCA
TGGATTGATTGCCTGGCTGGTACGCTTCAGAATCATTATTCGAATCGTTGCCTGGCCATG
GAAATATTTGATCATGTTAAGAGTATTACTTTTATAAATGATTTTAAATCTTTGATGGAT
TNTGGTTTTCTTTAAAAAAAAAAAAA

Homology of Contig U35_19466 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None