barSeed - Barley Seed Development Database

Probe CUST_7048_PI390587928

Source Contig U35_19818

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7048_PI390587928	Hv_44K_v2	GGCTGAAGAATGACCCAATCCCTTGGCCTAAGAAAAGAACAGAGAGTTAAGAGTATCAAA	1295	GeneList: darkgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.549	1.595	2.465	1.604	0.892	0.998
Raw	72.823	351.469	451.892	468.457	88.422	109.639

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363692	2126	7e-23	1986 - 2042	100	57 / 57	plus	ABC13376
MLOC	MLOC_45536.1	620	7e-23	392 - 448	100	57 / 57	plus	ABC13376
JLOC1	JLOC1_29561.1	808	4e-23	392 - 448	100	57 / 57	plus
Harvest21	ABC13376	1369	3e-25	1296 - 1355	100	60 / 60	plus	ABC13376
Harvest35	U35_19818	1369	3e-25	1296 - 1355	100	60 / 60	plus

Contig Sequence (1369 bp)

>U35_19818 1369 Hv_44K_v2
GCGGGACCTTGGTGGTTCTTCTTCCCCCGTGGAGGCCCCCCAAGCAGAAGCTGCTGTGGC
CTCTAGCGAGCTCGGAGTCGAGTCCAGAGGTGATTTCGACGGTCAAAACGGCCTTATCCA
AGGGGAATCGGAGTCGCGTGCCGGCGGCGTTTTGCGCGGCGAAGGGGCAGGGACGGAGCC
TGAGGCCCCAGAGGCCTCCACGCCACAGGCCAAGGAAGGAGTGGACAGGATGGAGACGAG
CTTGGATGACTCTGAGGCCTCGGACGGGTCGACCACGCAGGAGGACTCTGACACCGACGT
GGAGACGGAGTCCAGCAGCTCCAGCGCAGGGGAACAGGACACGGGATATAGAGTCCACGT
CCCACTCATGGAACAAGTGATCCGCGAGGTATCTGGTGAAAACAACGCTTCAGAGGCGAA
GAGCTCTGATAGGATGGATTCAGTAGCTGTATCAACACTTGTACTAGCTTCAGGTGCAGC
CATGTTACCTCATCCTTCAAAGGTGCACACAGGTGGTGAAGATGCTTATTTCATAGCTTG
CGACGGCTGGTTTGGTGTAGCAGATGGAGTTGGTCAGTGGTCATTTGAAGGAATCAATGC
GGGGTTGTATGCGAGGGAGCTAATGGATAGTTCCAAAAAAATTGCTATGGAGAATCAAGG
GCCACCAGGGATGAGAACCGAGGAAGTCCTTGCTAAGGCGGCAGTTGAAGCACGGTCCCC
TGGTTCTTCAACTGTCTTGGTTGCTCACTTTGATGGCCAGGTCCTTCATGTATCTAATAT
TGGCGATTCGGGATTACTGGTGATAAGAAATGGGCAAGTATACACACAAACAAAGGCGAT
GACATACGGTTTCAATTTCCCGTTGCAAATAGAAAACGGTGTTGATCCTTCAAGACTTGT
ACAGAATTACGCTATCGATTTACAAGAAGGCGATGCCATTGTGACAGCGTCGGATGGTCT
GTTCGACAACGTCTACGATCATGAGGTGGCATCTATTGTCTCGAAATCTCTGGAAGCTGA
CCGCAAGCCTACGGAGATTGCTGAGCTCCTGGCTGCTAGAGCAAAGGAGGTGGGCAGGTC
CGGGTCCGGGAGGAGCCCGTTCTCGGACGCGGCGCTCGCAGAAGGCTATCTGGGCTACTC
CGGGGGCAAGTTGGATGATGTAACAGTTGTCGTGTCCATTGTTAGGAAATCTGAACTATA
AGCTGTTGATAAGTTGTATTTCTACTCGGATCTTATGGCCATGGCCGCAGCAAGTTGCGA
GCCATATTCGGATCGAGTCCGAATGCTTGCATTTGGGCTGAAGAATGACCCAATCCCTTG
GCCTAAGAAAAGAACAGAGAGTTAAGAGTATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_19818 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g09220.5	429	5e-164	protein\|stage II sporulation protein E, putative, expressed
Brachypodium v1_2	Bradi1g71690.1	583	7e-174
Arabidopsis v10	AT4G33500.1	724	8e-72	Protein phosphatase 2C family protein \| chr4:16112835-16116243 REVERSE LENGTH=724