barSeed - Barley Seed Development Database

Probe CUST_7044_PI390587928

Source Contig U35_1162

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7044_PI390587928	Hv_44K_v2	TATCATCACATCACATGGGCCAAAAACATATGATGCAAGACACAATTCAATGGCAAAAAA	1511	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5449.2	1424	7e-23	6 - 62	100	57 / 57	minus	ABC02474 ABC02475 ABC37210
MLOC	MLOC_5449.1	2684	7e-23	26 - 82	100	57 / 57	minus	ABC02474 ABC02475 ABC37210
JLOC1	JLOC1_3508.1	1736	4e-23	1630 - 1686	100	57 / 57	plus
Harvest21	ABC02474	1581	3e-25	1511 - 1570	100	60 / 60	plus	ABC02474
Harvest35	U35_1162	1582	3e-25	1512 - 1571	100	60 / 60	plus

Contig Sequence (1582 bp)

>U35_1162 1582 Hv_44K_v2
GCTCGGCTTCAGCTTGTAAAAGCTTCAACCAGCCTCAAGCGGAAAACTACAGAGGGAGAG
AGGGAGGGAGGAAGACGGAGGACGCCGCGATGCGTTGTGCAGTGCTGCCGCTGCTGCTCG
TCTTCGTGGCGGCGCGCGCCGCCGCGGTCGTCACCGACGGTCTCCTGCCGAACGGCAACT
TCGAGCTGGGTCCGGCCAAGTCGGAGCTGGTGAACGGTACTGTGGTGAAGGGCGGGAAGG
CGATCCCCAAGTGGGAGACGTCGGGTTTCGTGGAGTACATCGAGTCGGGGCACAAGCAGG
GCGACATGCTGCTTGTGGTGCCGCAGGGCGCCTACGCCGTCCGCCTCGGCAACGACGCCT
CCATCCTCCAACGCATCCCCGTCGCCCGTGGCTCCTACTACGCCGTCACCTTCAGCGCCG
CCCGCACCTGCGCGCAGGCCGAGCGCCTCAACGTCTCCGTCAGCCCCGAGTCGGGCGTGC
TCCCCATGCAGACCATCTACGGCAGCAACGGCTGGGACTCGTACGCCTGGGCCTTCAAGG
CCAAGCTCGACGTCGTGGAGCTCGTCATCCACAACCCCGGCGTCGAGGAGGACCCCGCCT
GCGGCCCGCTCATCGACGCCGTCGCCATCCGCACCCTCTACCCGCCCACGCTCTCCAAGG
GCAACATGCTCAAGAACGGCGGATTCGAGGAGGGCCCCTACTTCCTCCCCAACGCCTCCT
GGGGCGTCCTCATCCCGCCAAACATCGAGGACGACCACTCCCCGCTCCCCGCCTGGATGA
TCATGTCCTCCAAGGCCGTCAAGTACGTCGACGCCGCCCACTTCAGCGTCCCCGAGGGCG
CCCGCGCCGTCGAGCTCGTCGGCGGCAAGGAGAGCGCGCTCGTGCAGGAGGTGCGCACCG
TGCCCGGCTGGGCGTACCGCCTCTCCTTCGCCGTCGGAGACTCCGGACACGACTGCAAGG
GATCCATGGTCGCCGAGGCCTACGCCGCGCGATCCACGCTCAAGGTGCCGTACGAGTCCA
AGGGCGCCGGCGGGTACAAGCGCGCCGTGCTGGACTTCGTCGCCGTCAGGGACCGCACGA
GGGTCGTCTTCCAGAGCGCCTTCTACCACATGAAGGCCGACGGCACGCTCTGCGGGCCCG
TCATCGACGACGCCAAGCTCGTCGGACTGCGCAAGAAGCCCGCCGCACGTCGCCTCATGC
TCTGATTAATTCAGATAGCCCCGCCGCCGCACGTCGCCTTACAACAAACAATATACTTCA
TATATGCGCGCATGCACGACGCGGTAACTCCCGGTCAGGATCAGTGACTACGTAGTATCT
ATTGCTAGGCTTTTGGTGTGCCAATCGATCGGATGGGTATATGTGTGTATGTGAGTTCGC
CGTTGCCTGCCGTGCTTATACTTGCGGTGGCTCGGCGCTTGTTGTTTTTTGCTTCTTTCA
TGTCAATCAACAAAGAAAAGAGTCATGTTAAAAAAAAAAAAAAAAAAGCCCGAGGGTTGG
TCACATTATATTATCATCACATCACATGGGCCAAAAACATATGATGCAAGACACAATTCA
ATGGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_1162 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g42520.1	374	0.0	protein\|expressed protein
Brachypodium v1_2	Bradi2g43230.1	371	0.0
Arabidopsis v10	AT5G11420.1	366	5e-167	Protein of unknown function, DUF642 \| chr5:3644655-3646991 FORWARD LENGTH=366