barSeed - Barley Seed Development Database

Probe CUST_7043_PI390587928

Source Contig U35_1163

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7043_PI390587928	Hv_44K_v2	CGGCGCTTGTTGTTTTTTGCTTCTTTCATGTCAATCAACAAAGAAAAGAGTCATGTTAAA	514	GeneList: paleturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	16.259	5.876	1.462	0.630	0.933	0.666
Raw	141.536	83.598	17.994	11.700	5.300	3.214

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5449.2	1424	2e-23	94 - 151	100	58 / 58	minus	ABC02474 ABC02475 ABC37210
MLOC	MLOC_5449.1	2684	2e-23	114 - 171	100	58 / 58	minus	ABC02474 ABC02475 ABC37210
JLOC1	JLOC1_3508.1	1736	1e-23	1541 - 1598	100	58 / 58	plus
Harvest21	ABC02475	589	3e-25	16 - 75	100	60 / 60	minus	ABC02475
Harvest21	ABC02474	1581	3e-25	1413 - 1472	100	60 / 60	plus	ABC02474
Harvest35	U35_1163	588	3e-25	515 - 574	100	60 / 60	plus
Harvest35	U35_1162	1582	3e-25	1413 - 1472	100	60 / 60	plus

Contig Sequence (588 bp)

>U35_1163 588 Hv_44K_v2
CCGCGTCGTCCTCGATCGGAACACGTCCAATATCGATCCCGACGACGACGGCGACGGCGG
CGACTCCTCGATCTGCTTGCCGCCGGTGACATCATCCTCCCTCATCATCAAGCTTTAGCG
TGACGCCGTCCGGGATGCGCCGGCCGTTGGTAGCCGCAATGTCGCGCAAGACGCGCCGCC
GCACGTCGCCTTCCAGAGCGCCTTCTACCACATGAAGGCCGACGGCACGCTCTGCGGGCC
CGTCATCGACGACGCCAAGCTCGTCGGACTGCGCAAGAAGCCCGCCGCACGTCGCCTCAT
GCTCTGATTAATTCAGATAGCCCCGCCGCCGCACGTCGCCTTACAACAAACAATATACTT
CATATATGCGCGCATGCACGACGCGGTAACTCCCGGTCAGGATCAGTGACTACGTAGTAT
CTATTGCTAGGCTTTTGGTGTGCCAATCGATCGGATGGGTATATGTGTGTATGTGAGTTC
GCCGTTGCCTGCCGTGCTTATACTTGCGGTGGCTCGGCGCTTGTTGTTTTTTGCTTCTTT
CATGTCAATCAACAAAGAAAAGAGTCATGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_1163 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None