barSeed - Barley Seed Development Database

Probe CUST_7042_PI390587928

Source Contig U35_1164

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7042_PI390587928	Hv_44K_v2	GGGTTTGTAGGTTTTTCTTTGGGAACATACTGTATTACTGTAGATTATTTCACATGTTGG	1335	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.081	0.761	1.789	2.336	1.036	0.903
Raw	9.273	144.242	283.196	551.865	89.759	84.862

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56477.1	574	2e-24	22 - 81	100	60 / 60	minus	ABC02477 ABC36859
MLOC	MLOC_56477.2	1854	2e-24	11 - 70	100	60 / 60	minus	ABC02475 ABC02477 ABC10764 ABC36859
MLOC	AK372443	1882	7e-23	1799 - 1858	98	59 / 60	plus	ABC02475 ABC02477 ABC10764 ABC36859
JLOC1	JLOC1_36529.1	1995	8e-25	1793 - 1852	100	60 / 60	plus
Harvest21	ABC02482	1433	3e-25	1333 - 1392	100	60 / 60	plus
Harvest21	ABC02477	563	3e-25	42 - 101	100	60 / 60	minus	ABC02477
Harvest35	U35_1164	1436	3e-25	1336 - 1395	100	60 / 60	plus

Contig Sequence (1436 bp)

>U35_1164 1436 Hv_44K_v2
GGCGCCGGCGTGTTCGGGCACCTGTCAGACTCGTTCCTGGGGCGGAAGGGCTCCCTCCAG
GTGGTCTGCTTCCTCAACGCACTCTTCGGCCTGCTCACCGCGCTCTCCCCCAGCTACAGG
GTCTACGTCGTCCTCCGCCTCCTCACGGGCTTCAGCACCGGCAGCATCGGCCTGTGCGCC
TTCGTCCTCGCCACGGAGCCCATCGGGCCCTCCCGCCGTGGCACCGCCGGCATGTCCAGC
TTCTACTTCTTCTCCGGCGGCATCGCGGCCCTCGCCGGCGTCGCCGCGATGTTCCAGTCC
TCCTGGCGCCTCCTCTACGTCGTCACCTCCCTCCCCTCCCTCGTCTTCGTGCTCGCCGTC
ATGCCGTTCGTGTCCGAGTCGCCGCGCTGGTACCTCGTGCGACGGCGCACTGACGATGCC
ATGCGCGTCTTGCGCGACATTGCGGCTACCAACGGCCGGCGCATCCCGGACGGCGTCACG
CTAAAGCTTGATGATGAGGGAGATGATGTCACCGGCGGCAAGCAGATCGAGGAGTCGCCG
CCGTCGCCGTCGTCGTCGGGATCGATATTGGACGTGTTCCGATCGAGGACGACGCGGGCC
AGGCTAGTGCTGTCCGTGCTCATCAACCTTCTCTGCTCGGTGGTGTACTACGGGCTCAGC
CTCAACGTCGTCAACCTCAAGACCAACCTTTACGTCAGCGTCGCCGTGAACTCGATCGCC
GAGATGCCGGCCTACCTGCTCACCGCACTGCTCCTCGACCACTTTGGCCGCAAGCCACTC
GGCATCGGCACCATGCTTCTCAGCGGCGTCTTCTGCATCGCCGGCAGCCTCATCGCCGGC
GTCGGCGCCATGAGGGTGGTGAGGATGGTATGCGGTGTGGTGGGCATCTTTGGGATGGCG
GCGACGTACAACTTGTTGTTCATATACACGGCGGAGCTGTTCCCCACGGTGGTGCGGAAT
GCGGCACTAGGGTGCACGTCGCAGGCATCGCAGATGGGTGCCATACTGGCGCCAATGGTG
GTCGTGCTCGGGGAACGGGTGCCGTTTGCAGTGTTTGGCGTGTCGGGGATCATCGGCGGG
CTGTTGGTGTTCTACCTCCCGGAGACGATGAACAAACCCTTGTATGACACCATGGCCGGC
CTGGAGGAAGGAGAGAAGACCCCCTTGAAGTAAGAGTAGGTAAGGTGCAGGGGTAACTCT
GAATTATATCAGTTTTCGCGTGTATCTTTGTACTGAAAGACGTTGCCGGTAGAAAATGTT
TTTTTTTTGAAAGGGTAGAAAATGCTTGTCGATGGAGTGAATCGCAAGTCGCTTCGTTTA
TTTTCTTGTTCTAAGGGGTTTGTAGGTTTTTCTTTGGGAACATACTGTATTACTGTAGAT
TATTTCACATGTTGGTAAATCAAAGGAATGTTTTTCTCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_1164 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g53930.1	393	0.0	protein\|organic cation transporter protein, putative, expressed
Brachypodium v1_2	Bradi5g22900.1	523	0.0
Arabidopsis v10	AT3G20660.1	526	1e-160	\| Symbols: AtOCT4, 4-Oct \| organic cation/carnitine transporter4 \| chr3:7225271-7228510 REVERSE LENGTH=526