barSeed - Barley Seed Development Database

Probe CUST_7041_PI390587928

Source Contig U35_1165

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7041_PI390587928	Hv_44K_v2	TTTCATGTTTGACAAATGTTAGACGCGTGTTATGCCGCCTTATCTGAATTGATAAAGTTT	1158	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.856	1.712	1.097	0.750	0.409	0.407
Raw	2286.933	3276.167	1866.883	2004.744	384.992	416.849

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57913.2	1381	2e-24	8 - 67	100	60 / 60	minus	ABC03470 ABC03471
MLOC	MLOC_57913.1	1401	2e-24	77 - 136	100	60 / 60	minus	ABC03470 ABC03471
JLOC1	JLOC1_37607.5	2509	8e-25	1424 - 1483	100	60 / 60	plus
JLOC1	JLOC1_37607.4	2262	8e-25	1177 - 1236	100	60 / 60	plus
JLOC1	JLOC1_37607.3	2319	8e-25	1234 - 1293	100	60 / 60	plus
JLOC1	JLOC1_37607.2	2298	8e-25	1213 - 1272	100	60 / 60	plus
JLOC1	JLOC1_37607.1	2190	8e-25	1105 - 1164	100	60 / 60	plus
Harvest21	ABC03471	1247	3e-25	1159 - 1218	100	60 / 60	plus	ABC03471
Harvest35	U35_1165	1257	3e-25	1159 - 1218	100	60 / 60	plus

Contig Sequence (1257 bp)

>U35_1165 1257 Hv_44K_v2
TGTCGCCGCCTCGCCGGGCTAGGGTTCTAGCCACGCAGCAGCCGCCGGCGCCGCTTGCAT
CGCGGGGTAAGTAGGTGGGCGCCACAGTAATCCTGACTGGATTATCTCTTCCGCGAGATT
CCCGGTTCGTTTCCTCGGCCGCTCGTTCAAGATGCCCCGGTATGACGACCGTTACGATCG
CTATGATGACCGTTATGATCGTTACGACGACCGTTACGATCGCTATAATGACCGTTATGA
TCGGTATGACCAATATGGTGGCAACACCAAGTTGTACGTGGGCCATCTTTCTACCCACAC
CCGGACCAAGGATGTTGAGTACCTTTTCGGCAGATATGGGAGAATACGATGTGTGGAGCT
GAAGCATGATTATGGCTTTGTTGAGTTTAGCAATCCCCGGGATGCAGATGATGCAAGGTA
TGAGCTTGATGGCCAAGATGTTGACGGGAGCCGTATCATTGTTGAGTTTGCAAGAGGGAC
CCCGCGTGGCCCAGGAGGTTCCCGCGAGTACTTGGGCAGAGGACCTCCTCCTGGTTCTGG
CCGCTGCTTTAACTGTGGGATTGATGGGCACTGGGCTCGTGACTGCAATGCTGGCGACTG
GAAAAATAAGTGTTATCGCTGTGGAGAAAAGGGCCATATAGAAAAAAACTGCCAGAACAG
TCCTAAGAATCTCAAGCGGGGAAGAAGCTACTCACGCTCCCCACCACCTTATCGTGGAAT
GAGCCGAAGCAGGAGTTACAGCCGATCGCCTTATACAAGGAGGGATGATTGTGCCGTTGG
CCATGAGGAAAGGCGACCAAGAAGCTCTAGTTACAGTCCTAGGAGGAGTGCTTCACCTTC
CGGTTTGAACCGCAGCCCAGCACCAAATGGCAAGAGCCACCCACCAAGGGAGCAAGCTGA
AGTCAATGGTTTACATAACGGTGTGAGAGGCAACAGCCTGAGTCCAGCTCGTGATAGCCG
CCCTGCCACTAACGGAAGGAGCCCCAGCGCGTGGGAGTGACGGTGAATGCCGAGCACTAT
CTGCAACTTGAATCTTGTTGCATTATCTCTTGGGCTGAACTCTTGTGTTGGTAGACTATG
TTTTAGTATGTTTGTCAAACGTTGATTCGCGTCATGCCTCCTCGTCTAAACCTGTCAAAG
CTGTCCGGGTCGTGATTTTTTCATGTTTGACAAATGTTAGACGCGTGTTATGCCGCCTTA
TCTGAATTGATAAAGTTTTTTTGCGGTTGTAACAATGTTATCTAGACTCGGCTGGAT

Homology of Contig U35_1165 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g06290.4	209	3e-84	protein\|splicing factor, arginine/serine-rich, putative, expressed
Brachypodium v1_2	Bradi2g34687.1	311	7e-105
Arabidopsis v10	AT2G37340.1	290	2e-72	\| Symbols: RSZ33, ATRSZ33, RS2Z33, AT-RS2Z33 \| arginine/serine-rich zinc knuckle-containing protein 33 \| chr2:15670372-15672331 REVERSE LENGTH=290