barSeed - Barley Seed Development Database

Probe CUST_7040_PI390587928

Source Contig U35_1166

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7040_PI390587928	Hv_44K_v2	TCAGACCATAATATCTGTTGTACTATGTGCACATGGAATCATTTTGCAGTTTCTACATTC	1203	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_79028.2	1440	2e-24	568 - 627	100	60 / 60	minus	ABC03470 ABC24431
MLOC	MLOC_79028.1	4413	2e-24	3756 - 3815	100	60 / 60	minus	ABC03470 ABC24431
JLOC1	JLOC1_52664.1	5138	8e-25	2074 - 2133	100	60 / 60	plus
JLOC1	JLOC1_52662.1	4440	8e-25	3530 - 3589	100	60 / 60	minus
Harvest35	U35_1166	1290	3e-25	1204 - 1263	100	60 / 60	plus

Contig Sequence (1290 bp)

>U35_1166 1290 Hv_44K_v2
CTGGCTAGTCTTGTCCCCTCCCGCGGCTAGGGTTTCCTCCGCTTCGCTCTCACAGTGCAG
AATGCCTCGCTATGATGAGCGTGATCGTTACGGCGGCAATACAAGGCTGTACGTGGGTCG
TCTTCCCTCGCGCACCCGCACAAGGGACCTTGAAGACCTCTTCGGCAGATATGGGAGAGT
GCGACATGTGGATATGAAGCATGAGTTTGCATTTGTTGAGTTTAGTGATCCCAGGGATGC
TGATGAAGCAAGGTACAACCTTGATGGTCGTGACTTTGATGGAAGCCGCATGATTGTCGA
GTTTGCTAAAGGGGTTCCGCGTGGCCAAGGAGGAGGAGGTGACCGTGACCGTGGCCGTGG
TGGTGACCGTGAATATATGGGCCGGGGGCCTCCTCCTGGTTCTGGCCGCTGCTTTAACTG
TGGCATTGATGGCCATTGGGCTCGTGACTGCAAAGCTGGCGACTGGAAAAATAGGTGCTA
TCGTTGTGGAGATAGTGGCCATATAGAAAGGGATTGTCAGAACAGCCCTAAGAACCTCAA
GCGTGGAAAGAGTTACTCCAGATCTCCATCTCCTCGCCGCGGAAGGGTGCGCGATAGGAG
CTACAGCAGGAGTCGCAGTAGGAGCTACAGCCGCTCTGTTTCCCCAAGGAGGGATGAAAG
GCGCTCAAGGAGCCCCCGTGACAGTCGCAGCCCAAGGAGGAGCCCCCGTGACAGTCGCAG
CCCTAGGAGGAGCCCCCGAGACAGTCGCAGCCCTATGAAGAGCCCCCGTGGCAGTCGCAG
CCCTATGAGGAGCCCCCGTGACAGCCGCAGCCCTAGGAGGAGTGCTTCACCTGCCAAGGG
GAGGGCCCGGAGCCCCACCCCTCCTGGCAGCAGAAGCCCTGCACCAAGGGAGAACAGCAG
GAGTCCGATGAAGGCTGACAGCCCTAATAACATGAGCCCAGCTGCAAATGGTCGTAGCCC
GAGCCCCAGGGACGGCGAAGACAATGGCAACCATCGTGCACCCAGTGGAAGTGCATCACC
CGGTGGTGGTTAAGTGGATCAAATTCTTCCAGTGTTCACCCAGTGGGAGTGCATCACCTG
GTGAGAGTCGAGAGTCGATCAAATTCTTCCTACAGTTACAAAACTCTCCAAAATCTTGAA
CAAAGACTTGCCTGTACGAGTTTGATTTTATCGTGTACTCTATTTCGGTATTTGATACTC
CAGTCAGACCATAATATCTGTTGTACTATGTGCACATGGAATCATTTTGCAGTTTCTACA
TTCCGTAAAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_1166 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g06290.4	209	1e-84	protein\|splicing factor, arginine/serine-rich, putative, expressed
Brachypodium v1_2	Bradi2g00370.1	320	1e-87
Arabidopsis v10	AT2G37340.1	290	9e-68	\| Symbols: RSZ33, ATRSZ33, RS2Z33, AT-RS2Z33 \| arginine/serine-rich zinc knuckle-containing protein 33 \| chr2:15670372-15672331 REVERSE LENGTH=290