barSeed - Barley Seed Development Database

Probe CUST_7032_PI390587928

Source Contig U35_19824

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7032_PI390587928	Hv_44K_v2	CAAAAGGGTGGATCACTTCAATTTCACATCCCTTTCTCTGTTATTCATCGTACTATCATG	910	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364742	1776	7e-23	922 - 981	98	59 / 60	plus	ABC14225 ABC47294
Harvest21	ABC11275	971	3e-25	911 - 970	100	60 / 60	plus
Harvest35	U35_19824	971	3e-25	911 - 970	100	60 / 60	plus

Contig Sequence (971 bp)

>U35_19824 971 Hv_44K_v2
GTCGCGGAAAAAATAATAAGCAAGAACAAAAAAAAGAAAAAAAGGGGCGAGGAAGAAACC
GAAGCACTCACACAGAACACCACACCCCCCACCCCGGCGACACACCACCCCAAATCTCAG
ATCAGAGCGCCGGGAGATCTGCCATTTACGGGTGGAGGGTTCGAGCCCCGCGCTTCTCGA
TTAAATCTTGGGCTCTGTATCTTGTGTGAATGGCATTTGTGCCTCAGAGACTCTAGCTCG
CCAAGTGTTGATTTGAACCTGTGGGGATAGGGATGGGTTCTCCGAGAAAATCCGACAAGA
AGGCCGCCTTAGACTTTGCAGCATGGAGTTTCAATATCACCTCATCTGTTGGGATCATCA
TGGTCAACAAAGCCTTGATGGCTACACATGGATTCAGTTTTGCCACAACATTAACTGGCC
TTCATTTATTGACAACGACCTTGATGACCATTGTGTTTCGGTGGTTAGGCCTGAGCCAGC
CCTCTCACTTACCGCTACCTGATCTGATTAAGTTCGTAATCTTTTCAAATTTGTCGATCG
TTGGCATGAACGTGAGCTTGATGTGGAATTCTGTGGGGTTTTATCAGATAGCAAAGCTGT
GCATGATACCCGCGTCATGTCTTCTGGAGGTTGTTTTTGACCGTGTACATTATTCACGGG
ACACAAAGCTGAGCATAATGGTTGTACTTGTAGGCGTTGCAGTTTGCACTGTTACTGATG
TCAGTGTGAATGCAAAAGGCATGCTTGCAGCTGTCATAGCTGTTTGGAGCACAGCTTTCC
AGCAGTATTATGTTCATTATCTCCAACGGAAGTACTCTCTGAACTCATTCAATCTCCTAG
CCCACACTGCTCCATCCCAAGCAGGTTCCCTCCTGTTAGTAGGGCCCTTTGTGGATTTCT
TGTTGACTGGCAAAAGGGTGGATCACTTCAATTTCACATCCCTTTCTCTGTTATTCATCG
TACTATCATGC

Homology of Contig U35_19824 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g05780.2	334	7e-122	protein\|transporter-related, putative, expressed
Brachypodium v1_2	Bradi4g43730.1	333	3e-131
Arabidopsis v10	AT4G09810.1	335	2e-96	Nucleotide-sugar transporter family protein \| chr4:6175415-6176892 REVERSE LENGTH=335