barSeed - Barley Seed Development Database

Probe CUST_7030_PI390587928

Source Contig U35_19826

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7030_PI390587928	Hv_44K_v2	ATAGTTCTATGACGCACCAGCTTTACCGTTCCGTTGAGCAAAGCAATTTCTGTGTGCAAG	1425	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.725	1.517	1.067	0.859	0.271	0.325
Raw	2422.300	3480.914	2062.807	2733.951	288.665	378.539

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372511	2105	2e-24	1779 - 1838	100	60 / 60	plus	ABC11452
MLOC	MLOC_73386.1	1786	7e-23	338 - 397	98	59 / 60	minus	ABC11452
MLOC	MLOC_73386.2	1880	7e-23	338 - 397	98	59 / 60	minus	ABC11452
JLOC1	JLOC1_48862.1	1815	4e-23	1391 - 1450	98	59 / 60	plus
Harvest21	ABC11452	682	3e-25	317 - 376	100	60 / 60	plus	ABC11452
Harvest35	U35_19826	1791	3e-25	1426 - 1485	100	60 / 60	plus

Contig Sequence (1791 bp)

>U35_19826 1791 Hv_44K_v2
AGTACCTGGAGAGGATCGCCGACGCCGTGAAGAGGAACAAGGAGGAAGAGGAGGAAGACG
ACGAAGATGACGACGACGAGGATGATGGTTTGCCCGGGGGGAGGCGGGTCGCCAAGCTTC
TCCGGAAGAAGCAGCTCGTGGAGAGCGGCAGGCAGCGCCTGAGCCTCGCCGCGAGGGTGT
TACCGCCGGGACAGCAGGATGGATTCAAATTTATAGCCAAGCACCGGCAACCAGTGACAG
CCGTTGCTCTGTCGAAGGACAGTGACAAGGGGTTTTCGGCGTCCAAAGATGGAGTTATCC
TCCATTGGGATGTTGAGACCGGGAAAAGCGACAAGTATTTGTGGCCAACTGAAAAGGTGT
TGGTCTCGCACCATGCTAAGGCTCCTCTGTCTAAAAAGAGAAGCCAGCATGTCCTTGCGC
TGGCTGTTAGTTCTGATGGGCGATACTTGGCTACTGGTGGCTTTGATAGGCATATCCATT
TGTGGGATGTTCGATCACGGGAGCACATACAGGCATTCAGTGGACATAGAGGGGCAGTAT
CCTGTCTTGCTTTTGGCCTGGACTCTTCAGAGCTATTCTCTGGTTCTTATGATCGTTCAA
TAATGCAGTGGAATGCTGAAGATAGAACATACATGCACTGCCTATATGGTCATCAAGGTG
AAATATTGACAACTGATGCACTCAGCAAAGATAGACTTCTGACTGTAGCACGGGATAGGA
CAATGCATCTTTGGAAGATACCGGAGGAGTCACAGTTAGTCTTTCGTGCGCCTGCTGTGT
CTTTAGAGTGCTGCTGCTTTATCGATGACAAGGAATATTTGTCTGGATCAGATGACGGAA
GCCTCGAGCTTTGGAGTGTTATGCGAAAGAAACCTACTCACATAATAAAAAATGCACATC
CAGCATTAACTCCTAGTTCACTTGACAGTGCTGATGAAAAGTTGCCCAAAGAAAATGGAA
TTTGTAAGCCTGAAAGCCTTTCGTCAGCTCATTCATGGGTTAATGCTGTTGCTGCAAGAA
AAAGGTCTGATCTGGCTGCGTCTGGAGCAGCAAATAGGTGTTGTTCGCCTTTGGACAATT
CAACCTGATTCAAAAAGGATGCAGCCATTGTTCGACTTGCCACTGGATGGCTTTGTCAAT
TCTCTTGCAATAGCAAAATCGGGACGCTTCATTGTTGCTGGTGTTGGCCGAGAACCTCGT
CTTGGAAAATGGGGTCGTGTCGCAACAGCAAAGAATGGGGTTGCAATTCATCGGCTCAGT
CTACAAGATGACTCTGAAGATTTGTAAGGTAGATAGCCTGCGCATTTAGAAACACCCTGC
GGCTTGTTCATACACTGTCAAGGCGAGAAAGATTGTACCAACACCATGAGTCACACTTGC
AGCTGAAAGATACAGGAAGGTCGAACCACAAGCTTCACGCATGCTATAGTTCTATGACGC
ACCAGCTTTACCGTTCCGTTGAGCAAAGCAATTTCTGTGTGCAAGCACGGATGGAGAGGC
ATTGGAATGGTTGGATGTAGAATTCGTAATTTCTGGGGAATGTGATGTCCAATTTTCTTC
TCTGTTTCCGTTGTAGACGGCAGGTGCAGGTTTGAAGCCCTATTCTTTTGCGCCCTGCCC
GAAATGATTGTCACGGGAAATCGTCGAGGTAGTTTTAAGCAGGGAAACAATTTTTTTGTG
GTTTTGGCTTTGGCAGGAGACGTTCTCTGTAATAGCAAATTTTGATGGCTGGTAGCGATC
TTTTGTGAAACTGAAATTTATGTTCTCTCTTCTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_19826 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g42770.1	512	3e-176	protein\|expressed protein
Brachypodium v1_2	Bradi4g01810.1	524	0.0
Arabidopsis v10	AT4G05410.1	504	3e-117	\| Symbols: YAO \| Transducin/WD40 repeat-like superfamily protein \| chr4:2743229-2745521 REVERSE LENGTH=504