barSeed - Barley Seed Development Database

Probe CUST_7023_PI390587928

Source Contig U35_1173

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7023_PI390587928	Hv_44K_v2	TTGGATGGGTGGAATTTTGTTTGTTTACATAGTGAACCGATCTGGTTTGCCTAATAAACT	2100	GeneList: darkgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.718	1.473	2.672	1.759	0.508	0.267
Raw	22727.723	70680.500	111074.866	111468.300	11656.110	6679.770

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67531.3	3750	2e-24	3500 - 3559	100	60 / 60	plus	ABC03392 ABC31829
JLOC1	JLOC1_44602.1	2253	8e-25	2030 - 2089	100	60 / 60	plus
Harvest21	ABC03392	2309	3e-25	2101 - 2160	100	60 / 60	plus	ABC03392
Harvest35	U35_1175	1588	3e-25	1379 - 1438	100	60 / 60	plus
Harvest35	U35_1173	2214	3e-25	2101 - 2160	100	60 / 60	plus

Contig Sequence (2214 bp)

>U35_1173 2214 Hv_44K_v2
GCTCAGAATCTACCAAACCCTCTCGGAGTTGACGAGCGGCGCCGCATGGGGTCACACGGC
AAGCCACCGCTACCGTACGCCTACAAGCCGCTGCCCTCGGACGCCGCCGACGGTAAGCGG
ACCGGCTGCATGAGGTGGTCCGCGTGTGCCACCGTGCTGACGGCCTCGGCCATGGCGGTG
GTGGTGGTCGGCGCCACGCTCCTGGCGGGATTGAGGATGGAGCAGGCCGTCGACGAGGAG
GCGGCGGCGGGCGGGTTCCCGTGGAGCAACGAGATGCTGCAGTGGCAGCGCAGCGGTTAC
CATTTCCAGACGGCCAAGAACTACATGAGCGATCCCAACGGCCTGATGTATTACCGTGGA
TGGTACCACATGTTCTACCAGTACAACCCGGTGGGCACCGACTGGGACGACGGCATGGAG
TGGGGCCACGCCGTGTCCCGGAACCTTGTCCAATGGCGCACCCTCCCTATCGCCATGGTT
GCCGACCAGTGGTACGACATCCTCGGAGTCCTCTCCGGCTCTATGACGGTGCTACCCAAC
GGGACGGTCATCATGATCTACACGGGCGCCACCAACGCCTCCGCCGTGGAGGTCCAGTGC
ATCGCCACCCCGGCCGACCCCAACGACCCCCTCCTCCGCCGGTGGACCAAGCACCCCGCC
AACCCCGTCATCTGGTCGCCGCCGGGGGTGGGCACCAAGGATTTCCGAGACCCGATGACC
GCCTGGTACGACGAGTCCGACGACACATGGCGCACCCTCCTCGGGTCCAAGGACGACCAC
GACGGCCACCACGACGGCATCGCCATGATGTACAAGACCAAGGACTTCCTCAACTACGAG
CTCATCCCGGGCATCTTGCACCGGGTGGTGCGCACCGGCGAGTGGGAGTGCATCGACTTC
TACCCCGTCGGCCGGAGAAGCAGCGACAACTCGTCGGAGATGCTGCACGTGTTGAAGGCG
AGCATGGACGACGAACGGCACGACTACTACTCGCTGGGCACGTACGACTCGGCGGCCAAC
ACGTGGACGCCCATCGACCCGGAGCTCGACTTGGGGATCGGGCTGAGATACGACTGGGGA
AAGTTTTATGCGTCCACCTCCTTCTATGATCCGGCCAAGAACCGGCGCGTGCTCATGGGG
TACGTCGGCGAGGTCGACTCCAAGCGGGCTGATGTCGTCAAGGGATGGGCTTCCATTCAG
TCAGTTCCTAGGACGGTGGCTCTGGATGAGAAGACCCGGACGAACCTCCTGCTGTGGCCC
GTGGAGGAGATCGAGACCCTCCGCCTCAATGCCACGGAACTGACCGACGTTACCATTAAC
ACTGGCTCCGTCATCCATATCCCGCTCCGCCAAGGCACTCAGCTCGACATCGAGGCCTCT
TTCCACCTTGATGCTTCCGCCGTGGCTGCCCTCAACGAGGCCGATGTGGGCTACAACTGC
AGTAGCAGCGGCGGCGCCGTTAACCGCGGCGCGCTAGGCCCCTTCGGCCTCCTCGTCCTC
GCCGCCGGTGACCGCCGTGGCGAGCAAACGGCGGTCTACTTCTACGTGTCTAGGGGCCTT
GACGGAGGCCTCCACACCAGCTTCTGCCAAGATGAGTTGAGATCGTCTCGAGCCAAGGAT
GTGACCAAGCGTGTCATCGGGAGCACGGTGCCGGTGCTCGACGGTGAGGCTTTGTCAATG
AGGGTGCTCGTGGATCACTCCATCGTGCAGGGCTTCGCCATGGGCGGGAGGACCACGATG
ACCTCGCGGGTGTACCCGATGGAGTCGTATCAGGAGGCAAGAGTCTACTTGTTCAACAAC
GCCACCGGTGCCAGCGTCACGGCGGAAAGGCTTGTGGTGCACGAGATGGACTCAGCACAC
AACCAGCTCTCCAATGAGGACGATGGCATGTATCTTCAATCAAGTTCTTGAATCTCGTCA
TTAATAAGCTACATTGGATCAAAGAAGATCACCAGGGAAGGGCAAGGCATACATAAATCA
AATCATTCTGCACAACCTCGCTTGCAGCATGCATTGAAACATCTGTATTTGGATCATCTT
CTTCATTTATGTCATAGTGAACTATATTACTTTGTTGGGCGTAGAACCTATATATGTAGT
TTGGATGGGTGGAATTTTGTTTGTTTACATAGTGAACCGATCTGGTTTGCCTAATAAACT
TAATTATGTGCTTGTTTACAAAATGAACTATTAATGAAAAAAAAAAAAAAAAAA

Homology of Contig U35_1173 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g01590.1	663	protein\|glycosyl hydrolases, putative, expressed
Brachypodium v1_2	Bradi1g52210.1	613
Arabidopsis v10	AT1G12240.1	664	\| Symbols: ATBETAFRUCT4, VAC-INV \| Glycosyl hydrolases family 32 protein \| chr1:4153699-4157457 FORWARD LENGTH=664