barSeed - Barley Seed Development Database

Probe CUST_7022_PI390587928

Source Contig U35_1174

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7022_PI390587928	Hv_44K_v2	GAGCATGAGCTGTGTTGTCCCTGTACAACTGAAATTGAAATCTGTTAATGAAAACATAAT	765	GeneList: lightsteelblue1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.056	1.846	1.094	0.638	0.181	0.151
Raw	77958.400	53931.567	28798.500	24555.700	2798.437	2420.240

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15020.2	888	2e-24	819 - 878	100	60 / 60	plus	ABC03393
MLOC	MLOC_15020.1	897	2e-24	13 - 72	100	60 / 60	minus	ABC03393
JLOC1	JLOC1_10282.1	878	8e-25	814 - 873	100	60 / 60	plus
Harvest21	ABC03393	835	3e-25	766 - 825	100	60 / 60	plus	ABC03393
Harvest35	U35_1174	835	3e-25	766 - 825	100	60 / 60	plus

Contig Sequence (835 bp)

>U35_1174 835 Hv_44K_v2
GAGATAGGAGGAGGAGGAATCGCCTGACACGATGGGCGCCACCGGCCAACGTCGGCTGTC
ATCTCTGCCCGCGGCGGCGGCGGCCGCGCCTCTCCTGCTTCTGCTCGCCGTGTCCTCCTG
GAGCCAGGCGGCGGCGTCGGCGGCGGCGGCTCCGGCCTGGACGACGGACCTGGAGAAGCA
CGTGGCGTTCTTCGACACCGACAACGACGGCATCGTCACCTTCTCCGAGACCGAGCAAGG
GCTTCGTGCCATCGGTCTTGGAGTTCTCGAGGCCACGGCCAGCGCCACCCTCATCAACGG
AGTCATCGGACCCAAGACCAGACCCGAAAATGCTACGACATCGAGGTTTGACATCTACAT
AGCCAACATCCACAAAGGGATGCACGGAAGCGACAGTGGCTCGTACGACGCCCAAGGAAG
GTTTGTCCCGGCCAAGTTCAACGGCATATTCACCAGGTTCGCCAAGGTCGAGCCGAACGC
CCTGAACGAGGCCGAGCTGGAGGCCATGCGCACTGCCAACAGGAAGGAGGGTGACTTCAA
AGGATGGGCGGCGTCCAAGGCGGAGTGGGGTATGCTGTACAACCTCGCCAAGGACAAGGA
CGGCTTCCTTGAGAAGAACACCGCGCGCACCGTCTACGACGGCAGCCTCTTCCCGAAGCT
GGTGAAGAAGGCGAGCTCATCTGGAAATTAACCGAGCATGATATGTATTTGTATTTGTTT
TTCGATATGAAATTTGTACTCCGTATTATCCGGGTCTTGTTCGTTGAGCATGAGCTGTGT
TGTCCCTGTACAACTGAAATTGAAATCTGTTAATGAAAACATAATTTACTGCTCC

Homology of Contig U35_1174 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g50140.1	217	7e-65	protein\|caleosin related protein, putative, expressed
Brachypodium v1_2	Bradi3g56820.1	218	2e-80
Arabidopsis v10	None