barSeed - Barley Seed Development Database

Probe CUST_7021_PI390587928

Source Contig U35_1175

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7021_PI390587928	Hv_44K_v2	TTGGATGGGTGGAATTTTGTTTGTTTACATAGTGAACCGATCTGGTTTGCCTAATAAACT	1378	GeneList: darkgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.720	1.449	2.646	1.726	0.511	0.264
Raw	22995.593	70117.700	110872.700	110324.266	11844.673	6670.177

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67531.3	3750	2e-24	3500 - 3559	100	60 / 60	plus	ABC03392 ABC31829
JLOC1	JLOC1_44602.1	2253	8e-25	2030 - 2089	100	60 / 60	plus
Harvest21	ABC03392	2309	3e-25	2101 - 2160	100	60 / 60	plus	ABC03392
Harvest35	U35_1175	1588	3e-25	1379 - 1438	100	60 / 60	plus
Harvest35	U35_1173	2214	3e-25	2101 - 2160	100	60 / 60	plus

Contig Sequence (1588 bp)

>U35_1175 1588 Hv_44K_v2
GACCAAGCACCCCGCCAACCCCGTCATCTGGTCGCCGCCGGGGGTGGGCACCAAGGATTT
CCGAGACCCGATGACCGCCTGGTACGACGAGTCCGACGAGACATGGCGCACCCTCCTCGG
GTCCAAGGACGACCACGACGGCCACCACGACGGCATCGCCATGATGTACAAGACCAAGGA
CTTCCTCAACTACGAGCTCATCCCGGGCATCTTGCACCGGGTGGTGCGCACCGGCGAGTG
GGAGTGCATCGACTTCTACCCCGTCGGCCGGAGAAGCAGCGACAACTCGTCGGAGATGCT
GCACGTGTTGAAGGCGAGCATGGACGACGAACGGCACGACTACTACTCGCTGGGCACGTA
CGACTCGGCGGCCAACACCTGGACGCCCATCGACCCGGAGCTCGACTTGGGGATCGGGCT
GAGATACGACTGGGGTAAGTTTTATGCGTCCACCTCCTTCTATGATCCGGCCAAGAAGCG
GCGCGTGCTCATGGGGTACGTCGGCGAGGTCGACTCCAAGCGGGCTGATGTCGTCAAGGG
ATGGGCTTCCATTCAGTCAGTTCCTAGGACGGTGGCTCTGGATGAGAAGACCCGGACGAA
CCTCCTGCTGTGGCCCGTGGAGGAGATCGAGACCCTCCGCCTCAATGCCACGGAACTGAC
CGACGTTACCATTAACACTGGCTCCGTCATCCATATCCCGCTCCGCCAAGGCACTCAGCT
CGACATCGAGGCCTCTTTCCACCTTGATGCTTCCGCCGTGGCTGCCCTCAACGAGGCCGA
TGTGGGCTACAACTGCAGTAGCAGCGGCGGCGCCGTTAACCGCGGCGCGCTAGGCCCCTT
CGGCCTCCTCGTCCTCGCCGCCGGTGACCGCCGTGGCGAGCAAACGGCGGTCTACTTCTA
CGTGTCTAGGGGCCTTGACGGAGGCCTCCACACCAGCTTCTGCCAAGATGAGTTGAGATC
GTCTCGAGCCAAGGATGTGACCAAGCGTGTCATCGGGAGCACGGTGCCGGTGCTCGACGG
TGAGGCTTTGTCAATGATGGAGTCGTATCAGGAGGCAAGAGTCTACTTGTTCAACAACGC
CACCGGTGCCAGCGTCACGGCGGAAAGGCTTGTGGTGCACGAGATGGACTCAGCACACAA
CCAGCTCTCCAATGAGGACGATGGCATGTATCTTCAATCAAGTTCTTGAATCTCGTCATT
AATAAGCTACATTGGATCAAAGAAGATCACCAGGGAAGGGCAAGGCATACATAAATCAAA
TCATTCTGCACAACCTCGCTTGCAGCATGCATTGAAACATCTGTATTTGGATCATCTTCT
TCATTTATGTCATAGTGAACTATATTACTTTGTTGGGCGTAGAACCTATATATGTAGTTT
GGATGGGTGGAATTTTGTTTGTTTACATAGTGAACCGATCTGGTTTGCCTAATAAACTTA
ATTATGTGCTTGTTTACAAAATAAAAAAAAATTGTTTGGGAAAAAAAAAAAAAAAATGTT
TACATAGTGAATGGTTGTTATTTGCATACTGGATTACAATTTTCGTTTATATAGTGAACT
GTTGTAGTTCTGGATTTGAAAAAAAAAA

Homology of Contig U35_1175 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g01590.1	663	1e-158	protein\|glycosyl hydrolases, putative, expressed
Brachypodium v1_2	Bradi1g52210.1	613	2e-180
Arabidopsis v10	AT1G62660.1	648	6e-108	Glycosyl hydrolases family 32 protein \| chr1:23199949-23203515 FORWARD LENGTH=648