barSeed - Barley Seed Development Database

Probe CUST_7020_PI390587928

Source Contig U35_1176

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7020_PI390587928	Hv_44K_v2	GCCGTAAGATCTTTGGAGCAAGGATCATCTTGGCTTGCTTTTGCTTCCTTCCTCTTTTTT	2707	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.240	1.159	1.056	0.975	0.506	0.597
Raw	274.716	385.846	321.899	458.688	85.976	108.165

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_48462.3	3742	4e-23	3663 - 3722	98	59 / 60	plus
JLOC1	JLOC1_48462.2	3740	4e-23	3661 - 3720	98	59 / 60	plus
JLOC1	JLOC1_48462.1	2649	4e-23	2570 - 2629	98	59 / 60	plus
Harvest21	ABC47399	147	5e-23	53 - 112	98	59 / 60	minus	ABC47399
Harvest35	U35_1176	2819	3e-25	2708 - 2767	100	60 / 60	plus

Contig Sequence (2819 bp)

>U35_1176 2819 Hv_44K_v2
AGAAGAGAGAGGAAGAGGAAAAAATCAATCCACCGAGCAGAGGAGAGAGGAGCAGGCCCC
CCCTCCGCCGCGCTGCCGCGGTGTTGACCCCTCCCCCCACGCTGGATCCCTCCACGGCGG
CGGGCGCGTCCTTCGGCGGCGGCGGCGCGTTGTTATGCCGAGAGGCGCCCAGGTTTCAAC
ACCATTCGCCTCTGGGTTTCTAGCATTCTCAGAAAGGATATGGAGCGCACCCTCTATGCA
AGTTCCCCTGTATCCCACGTCTCGCTGCTTGAGCAAGTTCTTGGCTGGAGATTTTGTCTT
TACGGAGACTTCCTTGTCATCTCCTTCGTCAATTGCACCTGAAGAACATACCTGGCTCAG
TGACTACAGTGCCTGGTCCCATGCTACTGGACATTAGGGCCGACTAGTGATTGCGGTGCA
CATCTATTCGAGCATGGTGCGTCTCTTCTCTGCCAACATTTTCGTAATTTTTGCCGTGGC
ACTGGTCAGCCAGCAAAAGTTACCATCAGAACTTCTTTGGACACTTGGGATCTAACCCGT
AGATCCTCCCTGTCGGTTACAAGCTCTAGGTTCTGGTTCTCTTTGCTTCTGTCAGCTCTC
TTCTCCCCTATCACTGCGAGTTTTCAGTTTGTCCGGCTTGATCTTTGGTGTGTATAGTGT
GCACTGTTCTTCATCAGGCTTCACTTCTGATGGCGTGACGCGAGGGCATAGGTGTTCAAG
TTTAGTTGTCACAAAGTATGGGTATTGCCTACAGACGTTTGAAAAAAGCCTGCAGTGACT
TTGGTGACCTACTCTCCAAAGACATTCCGGCAATACGCGTATGAGTCTTGTTCGTGTTTA
TAGGACTGTTCAAAAATAAGGACAGCGTTGCATTCTAGCTAATAAAATGGAGAGGTATAA
CATTATTACGGAAGTGGGTGACGGTACGTTTGGTAGTGTTTGGCGTGCAATCAATAAAGA
AAGTGGCGAAGTGGTTGCAATCAAGAAAATGAAGAAAAAATATTTTTCTTGGGAGGAGTG
CATCAATCTCCGTGAAGTGAAGTCCCTCCGAAGGATGAACCATCCAAACATTGTGAAGCT
CAAGGAGGTCATAAGAGAGAATGACATGCTATTCTTTGTTTTTGAATACATGGAATGCAA
TCTCTATCAGCTGATGAAGAGCAAGGGCAAGCCCTTTTCGGAGACTGAAATCCGGAACTG
GTGCTTTCAAGTATTTCAAGCTCTTAGTCACATGCATCAACGTGGATACTTTCACCGTGA
CCTTAAGCCTGAAAATTTGCTGGTTACAAAGGAGCTCATCAAGGTAGCTGATTTTGGGCT
TGCTAGGGAGATTATTTCTGAACCACCATACACAGAATATGTGTCAACTCGCTGGTATCG
TGCCCCAGAGGTTCTGCTTCAATCTTCTGTTTACAGCTCAGCAGTTGACATGTGGGCTAT
GGGCGCCATTATTGCAGAGCTTTTTTCACACCGACCTCTTTTCCCTGGCTCAAGTGAAGC
GGATGAGATTTACAAAATCTGTAACATTCTTGGCACTCCAAATCAGCATACTTGGGCTGG
AGGGCTGCAGCTGGCAGCATCTATCCATTTTCAGTTTCCTCAGTCTGGAAGCATAAATCT
TTCAGAAGTGGTTCCCACAGCAAGTGAAGATGCGCTGAACCTTATTTCGTGGCTTTGCTC
ATGGGACCCACGTAAAAGGCCAACCGCAGTGGAGGTTTTGCAGCATCCCTTCTTTCAGCC
ATGCTTCTATGTCCCCCCTTCACTTCGTTACAGATCGACAGGATATGCAACACCACCGCC
ATCAGTCGGGGCTAAAGGAGCTATGGACCAGAAGAATGCTAGGAGATACCCTGTGGGGAC
TTTATCCAATGGGAGGCCGGCAGTTAATAACTCCTACCTTAGCACCAACGCCCCAGCAAG
AGCAGCTGGCGTGCAAAGGAAGCTAGAGTTGGATCATCAGGTGAAACCAGAGGGCAACCA
TAAGCTGACGACGAAGGAGAACGCAATGAACCAGCCTTGGTCCAGACTACCTCCAGCACC
AGTGAGGAACAACATGAACTACCTTGCCGCCAAAGAGCAGATCCCTCGTGGTGGCGCGCC
AGACATAGCCGAGAAGCTGTCCCAGCTGTCGATGTCCACCACCACCCGGGCGCCGATCAT
GCCTTCCGACAGGTTTGTGGACCTGAAGGCCACTACCAGAGCTCACGGGGAGCCCGTGAG
GCGGCCCGTGCCTCTGGGACCCAGGGACACGTGGCATGCCCGAAACGACCCCTTCCGGCG
CACCTATGAGATGCCGGGCGAGAGGGCTCTCCTCCAGAGGAAGCTCGTCAGCTGAGGACC
ATCCCACCGACGCCCGCCCTTCCGCCATCCATCTGCCTCTTCGCATCATCGACACCACCA
CCACCACCACCCCGACCACAATAATCCGGCGGTCTCCTTCCTGGCGGTCGCTACCAAGTT
TGTGTCTCTCTTTCATCGTTTGTGTTGTGATTGAAAATAAAATCCAGTCTCCCCCGTTCC
TCGGGTCGCATTGCAGCGGGGAGAGTGAAGAGCACTGCCGTGTTTCCTTTGGGCTTTCGA
GTGTGAGAAACTTGGACGATGATATATATGCTTTGTGTTATTTGTGTGCGAGCCCAAGCG
GCCAATGTTACTTCCAGTGCTGTCTCATGGTTCTACCCGTTGATCATCGAAACTGAAATG
AAATGTTGCCGTAAGATCTTTGGAGCAAGGATCATCTTGGCTTGCTTTTGCTTCCTTCCT
CTTTTTTTTTTTAATGGGAATACCGACTCGATCTCTTCTCCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_1176 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g02550.2	485	protein\|CPuORF21 - conserved peptide uORF-containing transcript, expressed
Brachypodium v1_2	Bradi1g50590.1	476
Arabidopsis v10	AT4G19110.2	464	Protein kinase superfamily protein \| chr4:10454770-10457468 REVERSE LENGTH=464