barSeed - Barley Seed Development Database

Probe CUST_7017_PI390587928

Source Contig U35_1179

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7017_PI390587928	Hv_44K_v2	TAGCGTCTACTTGCGCTGCTTCGTCTTCAGATGCAAGGGACTACTCATTTCGAGAAAAAA	759	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.192	0.265	0.679	1.341	1.317	1.928
Raw	2.875	9.394	25.658	77.624	26.655	41.661

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7938.1	1095	9e-22	977 - 1031	100	55 / 55	plus	ABC03233 ABC03234
JLOC1	JLOC1_5254.1	1049	5e-22	937 - 991	100	55 / 55	plus
Harvest21	ABC03233	819	3e-25	760 - 819	100	60 / 60	plus	ABC03233
Harvest35	U35_1179	819	3e-25	760 - 819	100	60 / 60	plus

Contig Sequence (819 bp)

>U35_1179 819 Hv_44K_v2
TTTGGTTATCGCATTTCTCAGGTAAGGCTCAGGTTTCGGAGTAGCGAAGCTTTTAAAGTG
TGCATCTGGCTACCGGCATGGCTGGAGAGCAAGCGTTCCACCGGGGAGGCGTGTACGGAG
GCGGCAGCGCCGTCGGGCCGGACTACATGCGGGCCATCCGCGGCGACGACGACTACTACG
GCGGGCACGGCCAGGGCCACAACCAGCCGGCGGCCGTCACCCTCGCGAAGGGGGTGGCCG
CGGCGGCGGCCGCCGGGTCGATGCTGTTCCTGTCGGCCCTGACGCTGACGGGCACGGTGC
TGGCGCTCATCGTGGCGACGCCTCTGCTGGTGATCTTCAGCCCCGTGCTGGTGCCCGCGG
CCATAGCGGTGACGATGCTGACGGCTGGGTTCGTGTCGTCGGGGGCGTTCGGCGCGGCGG
CGGTGGCGGTGCTGGCGTGGATGTACAAGTACCTGTCGCACGGGTCGCCCTCGCCGATGG
GGGCTGACACGGTGGACCACGCGGGCGCGAAGCTGGACTCCAAGGCGCACGACGTGAAGA
ACTGGGCGCAGCATCGCCTCGACCAGGCCCGAGCTCCGTAGGCATGTTTTGGTCATTTGC
CCTCCTATGTGGTTACCAGTGTGGATCCACGCCTCTCTATGTACGGACGTGCCTGCGGGC
GGTGCTAGTACCACCGACGAATAATAAGTTGTTGCATATCTTATCTACTACGTAAAAAAA
AAAAAAAAAAGGAAAACGCCTGTACTAACTTGTTCCTTCTAGCGTCTACTTGCGCTGCTT
CGTCTTCAGATGCAAGGGACTACTCATTTCGAGAAAAAA

Homology of Contig U35_1179 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None