barSeed - Barley Seed Development Database

Probe CUST_7016_PI390587928

Source Contig U35_19830

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7016_PI390587928	Hv_44K_v2	TTTTAGCTCCCAGCATACCAAGTGATCTTGCCTGGTGCCTGCTTAAAGGGTTCATCAAAT	1209	GeneList: darkmagenta MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.770	1.969	1.078	0.837	0.437	0.528
Raw	773.903	853.986	415.616	503.383	93.075	123.408

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_4499.2	1299	8e-25	1115 - 1174	100	60 / 60	plus
JLOC1	JLOC1_4499.1	1434	8e-25	1250 - 1309	100	60 / 60	plus
Harvest21	ABC14313	1354	3e-25	97 - 156	100	60 / 60	minus	ABC14313
Harvest35	U35_19830	1365	3e-25	1210 - 1269	100	60 / 60	plus

Contig Sequence (1365 bp)

>U35_19830 1365 Hv_44K_v2
ACAAGCATCTCCCGTTAGGGTTCCTCACTCCCGACCGGCGCCGCCACCTGCCCCCATCTC
CGGCCGCCACCGGAGTCCCTTCCCTCCTCCCTGAGCCGCCCCCTCCCGCTTCCGAACGCA
CGGGCGCCACCGACGCCCACGTCCTGCTTGGCCACCGACTGCCCGAGCCGAAGCTCCGAC
CGCCGCCGCCGTCGCCGCTTGCGATGGAGGCGCTCCGGGAGGCGACGGCCGAGCTAACGG
TGTACGTGCACCCGTCCAACGCCGCCGACGTCCGCCGCGCCGTTGCCCGCCAGCTCAGCA
CCCTCCTATTCTCGTACGAAGGTCGCTTTGATGGCGTGTTGCTATCACATGAAGTTGAAT
TCGAAGGTGACAACGAAGATGACCAAGACAGAGAAGTTGACAAAGACGGGAAAAAAGTTA
TCAAAGCCAAAATCCTTGATGGTTTGGTACCATATTTTGGCGTGCCGGTGACTGCAAACC
TGCTGCTGTTTTCTCCCCAGCCAGAGATGATACTGGAAGGGAAGGTTGAAATGCTTGGCA
AGGAATCAATTCATGCCATTGTCCTGGGGGTTTTCTCAGCAGCCATTATGTCAGATGATA
TCCCTGAGACGTTCAAATTCAAAAGAAGAGGACATGGAGGAAAATTTATAAGCCAGTTGG
ACAAGCAGCATGTGATTAAAAAAGGAAGCATGATACGGTTTTCTGTTAAAAGGGTGGACA
CGGAAATGAATTGTCACATAACTGGATCTTTGATGCCGCCTCACACAGGATGCATGCGTT
GGCTATCAGTACATGATGCTGAATACGCATCAGAAATTAGCAGCGGTAAAAGGAAATCAA
GGGATCACACCAAGACCGAGCACAATGTACAAGGCCGCGCAACTGTGAACAGCGAAGATA
GCGTGGTGAATTCTGAACGACCACGCAAGTCCAAAAAGCGGAGTGTTGAGGAATAATGAT
GCCACTAAAGTAAAAAAAAAGTCATGGACTCGGCCTTGCAATCTTGCTGACTTGTTCTGG
AAACATGGTTTTGCTTGGCTCGGAAGCTGCTTCCCAGTTGCTTAGTGCCAGTAATTTTTT
GCGTAGCATCAATTGTATGATGATGATGTAAAATAGGACGGTTAGTGAGCGCATGGTACG
TTTATCTGGTGTTTTCTGATCTTCCAGAGGCGACCTTGTTTATGGGCAAATTGACATGTT
TCAAATTTGTTTTAGCTCCCAGCATACCAAGTGATCTTGCCTGGTGCCTGCTTAAAGGGT
TCATCAAATGCCAGTATTGCTGCAGAGTGGCAGGGGCGAGAGACGTCCTTTTTTGCCTGC
ATGAACATTAAGGAGCTACCGGGACAGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_19830 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g34854.1	235	4e-115	protein\|RNA polymerase Rpb7, N-terminal domain containing protein, expressed
Brachypodium v1_2	Bradi3g20560.1	233	8e-126
Arabidopsis v10	None