barSeed - Barley Seed Development Database

Probe CUST_7015_PI390587928

Source Contig U35_19831

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7015_PI390587928	Hv_44K_v2	ATTTCGGCAGGGATGACAAGATTGTTGGCGCAGAAGGCCTGCCTGCTCTGCCGATGATGT	612	GeneList: midnightblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.171	0.419	0.873	1.228	2.230	2.942
Raw	21.050	72.706	145.224	292.320	190.891	284.956

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368859	1503	2e-24	601 - 660	100	60 / 60	plus	ABC13835
MLOC	MLOC_61146.2	1815	2e-24	935 - 994	100	60 / 60	plus	ABC13835
MLOC	MLOC_61146.1	1772	2e-24	891 - 950	100	60 / 60	plus	ABC13835
JLOC1	JLOC1_39941.1	1760	8e-25	719 - 778	100	60 / 60	plus
Harvest21	ABC11756	641	3e-25	571 - 630	100	60 / 60	plus
Harvest35	U35_19831	684	3e-25	613 - 672	100	60 / 60	plus

Contig Sequence (684 bp)

>U35_19831 684 Hv_44K_v2
GTTCTAGATCGCGAGCATCCTCCTCTCCTATCCTTCTCTCGCCTCGCCTCCCCTCCCCTC
CCCTCCCACCGCTACCAGCTTCCTTCCGTCCGTCCGTCCGTCCGTCGTCGCCGATCGGGA
GAGGTGGCGTGCGGCGTGTGTTCCCTTGTTAGCGCGCGTGAGTTTGCATGGGGCTGGACG
TCGGCGAGATCGGGATGCCCCTCGACCTGGGCCTCGACCTCAAGCTATTCGTCGCCAAGA
CCGCCGGCCGGCTCGCCGCCGCCGCCAAGGAGCCGCCCGCCGTCGACGCCTGCATCCGCG
GCCTCGAGGAGGAGCGCCGCAAGATCGAGGTCTTCCGCCGCGAGCTGCCCCTCTGCGCCC
GCCTCCTCGCCGACGTGATCGAGTTCATGAAGGAGGAGGCGGCCAAGAGGAGCGAGCGCC
GCGACGCCGACGACAACGACAAGCGCAAATGGATGAGCACCGCGCAGCTCTGGGTCGACA
GCCGCGCCGCCGATCCCCTCAAGGAGCAGAAGAAGGAGAGCGCCCTGTCCAAGCCCATGC
TGCTCGGCGGCGCCACCGGCGCGCCCATGGCAGTCAGCTGCGGCGCAATGCCGCCGCCGC
CGGCTCCCCAGTATTTCGGCAGGGATGACAAGATTGTTGGCGCAGAAGGCCTGCCTGCTC
TGCCGATGATGTCTCCCGCTGCGA

Homology of Contig U35_19831 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g07630.1	350	2e-68
Arabidopsis v10	None