barSeed - Barley Seed Development Database

Probe CUST_7009_PI390587928

Source Contig U35_7485

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7009_PI390587928	Hv_44K_v2	TTGGAACACATATATGTTTTCTCCCTTGCTATGAGTTTATTTATTACTCCTCCGTCCCAA	451	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.882	3.775	1.265	0.558	0.901	0.802
Raw	22.477	46.306	13.476	7.135	2.776	2.777

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC24178	528	1e-23	16 - 76	98	60 / 61	minus	ABC24178
Harvest35	U35_7485	526	3e-25	452 - 511	100	60 / 60	plus

Contig Sequence (526 bp)

>U35_7485 526 Hv_44K_v2
TGCTTTGGTCAGAGCATGCCTCGTAACCGTAGCGTGGATGAGCAGCTCCCTCTCCCCATT
GCATGGATGCAACACTTTCCAGCCTTTGGCGTGCTCCGTTCTCGCTGCTAAGCTTCTAGA
TAGGTTGAGCTATGACACAGTTATGGAAGAAAGGGTGCTCGCTGCTCTATCACTGTTGAA
TCTTGTGAGACATCCAGAATGCTTGGAGGGGCTTTTGCCACTGAAGAGGGACACGACGGA
GTCGTTGCGTGACCTGGCAGATGTGACGTGGACCGCCAAGGAGCTCCTCTTTGCCTGCTG
CAGATGACAGACCCTATCTGAAGAGGGAATTGCTTCTCAGTGCATACCAGTATGGAAGAA
GTGTAGCGATGGGTCACAACTAAGTGTAATTTTGCCCGTTTTTGTACACATTTCTTTTCT
TGATTTGTAAAGCCTCAGATTTTTATTTCCCTTGGAACACATATATGTTTTCTCCCTTGC
TATGAGTTTATTTATTACTCCTCCGTCCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_7485 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g07190.1	963	3e-51	protein\|expressed protein
Brachypodium v1_2	Bradi3g05110.1	1044	1e-53
Arabidopsis v10	None