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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_7008_PI390587928Hv_44K_v2CGTCAGTTGGCTATGTATGATGTACCACATGTTCTGAATTAGCTTCTTCATGTATTATAA640GeneList: orangered4
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.9672.3591.1360.6520.2450.337
Raw 832.0041617.784654.738596.47978.557118.497



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK35695324452e-241516 - 157510060 / 60plus ABC20803
MLOCAK36696320052e-241910 - 196910060 / 60plus ABC20803
MLOCMLOC_8727.112372e-2437 - 9610060 / 60minus ABC20803
JLOC1JLOC1_5784.115008e-251286 - 134510060 / 60plus
Harvest21ABC208036973e-25624 - 68310060 / 60plusABC20803
Harvest35U35_74867393e-25641 - 70010060 / 60plus



Contig Sequence (739 bp)

>U35_7486 739 Hv_44K_v2
TCCCTCCATACTTCCGCTCAGAACCAGTACCACAAGAAAAGGGACTAGTTGAAAAGGTTG
TTGGACGTACATTGGATTCTTCTGTCTTGCAAAGCCCTCACAATGTCCTCCTGGAGGCTT
ATGCACCTTGGTGTGTTGACTGTGAAGCCATCAGTAAAAACATTGAGAAGTTGGCCAAGC
ATTTCAGTGGTTTGGATAATCTTAAATTTGCACGTATTGATGCTTCGGTGAATGAACATC
CAAAATTGCAGGTAAACAATTACCCCACACTCTTGCTTTATCCTGCTGAAGACAAGACCA
ACCCGATAAAACTTTCAAAGAAATTAAGCCTGAAAGACATGGCGAGATTCATCAAGGAGA
AGCTGCAGATTTCTGACGTTGAAATCAAGGAGAAGCTCCAAACTCCTGACGTCGAAACAG
TAGCTGCTGCTGACAATGTCAAGGATGAGCTATAGTGGATTGCTCGTTCAAGCACGCTTG
ACGCGTTGAAGGAAAATGATGGCATATCTGCGTTGCTATGGCAATGACCATGGAGCATGG
CGTTTATAGAGAAGGAAATAGAGTAGGGGTTGATCACGGTTACACAGTAGGCATCTAAAA
ATATATATGATGAATTGATCATGTACCAAATGTTCTAACACGTCAGTTGGCTATGTATGA
TGTACCACATGTTCTGAATTAGCTTCTTCATGTATTATAATGAAATAAAGTCAGGAACTC
CGAAAAAAAAAAAAAAAAA



Homology of Contig U35_7486 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os06g06790.15345e-71protein|OsPDIL1-5 protein disulfide isomerase PDIL1-5, expressed
Brachypodium v1_2Bradi1g48460.15443e-84
Arabidopsis v10None