- Probe CUST_6997_PI390587928
- Source Contig U35_7497
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_6997_PI390587928 | Hv_44K_v2 | CATGAGCACTCCTGTTATTTCTACGGGTTAATTTTCAAGGAAGAAGGCCTCATGAACAAA | 401 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.457 | 1.625 | 1.227 | 0.732 | 0.255 | 0.309 |
| Raw | 168.470 | 297.099 | 196.604 | 189.439 | 21.852 | 30.055 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_57836.1 | 2815 | 7e-23 | 12 - 68 | 100 | 57 / 57 | minus | None |
| JLOC1 | JLOC1_37554.1 | 2874 | 4e-23 | 2579 - 2635 | 100 | 57 / 57 | plus | |
| Harvest35 | U35_7497 | 475 | 3e-25 | 402 - 461 | 100 | 60 / 60 | plus |
Contig Sequence (475 bp)
>U35_7497 475 Hv_44K_v2 GGGCAAGCAAAGGCGTCTACCGGGTTGTCCGGCCCAGCCTCTGCGGTTACACTTGCCCGA CAGAGAAACCTGAGACGAACAACGGGAAGGCACCCGCCGGTCCTTCGTCGAATGCGCCAG CAGCAATGGGACTGGGCATGAAAATGGCGGCTCTATTGCTGTCCGCCGCCACGTCCTTTG TTTTGATGAGATAGGAGGATCCTACTACGTTCATCATGTCTTGGTATGCCGTAACATCAA TCCTCACAATTTATCATGTATTAGCAGTACAATAATAAGTCAGCAATATTTCCTTGTACA GTTAGGGGTATGAGTCATGACACATGGGCCTTATGAGGATTAGATTCTGAAACTTAATAT CAGTCTCTGTATGAGCATATACCTCGTTGTAAACCACCTTTCATGAGCACTCCTGTTATT TCTACGGGTTAATTTTCAAGGAAGAAGGCCTCATGAACAAAAAAAAAAAAAAAAA
Homology of Contig U35_7497 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |