barSeed - Barley Seed Development Database

Probe CUST_6996_PI390587928

Source Contig U35_7498

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6996_PI390587928	Hv_44K_v2	AACCATCGAGTGCGTTTTTGTTGATGCTGGAGTTGCTGCCATTGATATCGAGACAAAAAA	1884	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364738	4540	2e-24	2348 - 2407	100	60 / 60	plus	ABC15231
Harvest35	U35_7498	1955	3e-25	1885 - 1944	100	60 / 60	plus

Contig Sequence (1955 bp)

>U35_7498 1955 Hv_44K_v2
GGATTGCTCTGCTGCTGCGAGGCTCCACTGCGTAATAACAGTCGTCCGCTTTCAGTGCAC
CTGCACCATCTACAAGAGGAAGACATTTTGTTGTCATTTGTTGAGAGAACAAAGCAATAT
TTTTGGACTTAGTGACTATGCGTGGCCGCGATGTTCCTAAGCAAGAGCTTGACAACAAGT
CACTTTTATGTATGGAGTTCCTCTCCAGGTCATCTTCTAGTGATGCCCCTCTTGTTGCAT
TCGGGGCATCTGATGGTGTGATTAGAGTTCTCTCAATGATGACATGGAAGCTTGTTCGAA
GGTATACTGGTGGACATAAAGGAGCAATATCTTGCTTAATGACATTCATGTCTGCAGCCG
GCGAGGTACATTTAGTTTCTGGTGGTAGTGATGGCCTGCTGGTATTATGGAGTGCTGATC
ATATCCACGACTCTCGGGAACTTGTACCTAAGATTAGTTTGAAGGCTCACGATGGAGGGG
TGGTTGCGGTTGAACTTTCAAGGGTAATGGGAAGTGCTCCACAGCTCATTACAATAGGGG
CTGATAAAACTTTAGCCATATGGGATACCGTTACATTCAAGGAAATAAGGCGCATTAAAC
CAGTGCCTAAACTTGCCTGCCATAGTGTTGCATCTTGGTGCCACCCTCGTGCACCAAACC
TTGATATTCTGACTTGTGTCAAGGACTCCCATATTTGGGCCATAGAACATCCGACTTATT
CTGCTTTAACAAGACCACTCTGCGAATTGTCCTCGCTTGTTCCTCCGCAAGCCCTTGCAC
AGCATAAAAACTGAGGGTTTACTGCATGGTGGCACATCCCTTGCAACCACATCTTGTTGC
TACTGGAACAAATATCGGTATTATTTTAAGTGAGTTCGATCCAAGAGCACTACCGGCTGT
TGCTCCTCTACCAGCACTGACAGAAAGCAAGGAACACTCTGCTGTTTACATTGTTGAAAG
AGAACTTAAGTTGCTGAATTTCCAATTGTCAAACACAGCAAACCCGTCCCTGGGAAGTGC
ATCTGAAACAGGAAGATCAAGGAATGAAACTATAGATCAGCTGATAGTAAAGCAAAGCAA
GAAGCATATCAGCACGCCTGCTCCTCATGATTCATATTCAATTCTTTCAGCTAGCAGTTC
TGGAAAGTATGTTGCAGTTGTATGGCCAGACATTCCTTCATTCGTTGTGTACAAAGCTAG
TGATTGGTCAGTTGTTGATTCAGGCACGGGAAAACTTTTCGCATGGGACAGCTGTCGCGA
CAGATATGCTTTGGTCGAGAGTGCATTGGCTCCAAGGATGCCACTTATTGTGAAAGGCGG
TTCCTCTAAAAAGGCAAAAGAAGCAGCAGCTGCAGCAGCTCAAGCAGCAGCTGCAGCTGC
TAGCGCTGCTTCTACAGCCACAGTACAAGTTCGCATTTTGTTAGATGATGGAACAGCTCA
TGTTCTGCAGAGATCCATTGATGGCCGTAGTGAACCGGTTGTTGGCTTGCATGGTGGTGC
TCTCCTTGGTGTTACATACCGAACATCTCGTAGAATAAGTCCTTTGACGGCCACTGCTAT
ATCAACTGTTCAATCAATGCCCCTATCAGGCTTTGGAGGAAGTGGATCATCTTTTGCTTC
GGATGACCCATTTTCCTCCAGAGAAGGGCCACCCCAAAATTTCCAGCTATACAGCTGGGA
GACCTATCAGCCTGTAAGCGGCTTACTTGCACAACCTGAATGGACTGTGTGGGACCAAAC
TGTTGAATATTGTGCATTTGCTTATCAGCAGTACATTGTAATTTCTTCCCTGCGACCTCA
GTTTAGGTATCTCGGGGATGTTTCAATTCCTTCTGCTACTGGTGCTGTTTGGCACCGTAG
ACAGTTGTTTGTGGCTACACCAACAACCATCGAGTGCGTTTTTGTTGATGCTGGAGTTGC
TGCCATTGATATCGAGACAAAAAAAAAAAAAAAAA

Homology of Contig U35_7498 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g46510.1	1378	protein\|peptidase S8 and S53, subtilisin, kexin, sedolisin, putative, expressed
Brachypodium v1_2	Bradi2g45380.1	1382
Arabidopsis v10	AT5G24710.1	1377	Transducin/WD40 repeat-like superfamily protein \| chr5:8459148-8467920 REVERSE LENGTH=1377